Use identifiers.org URIs for ConceptScheme and Concept resources

[abargnesi]

If we can create our resources using the http://identifiers.org/... URI / URL values then our SKOS RDF becomes more convenient to consumers.

We could then link BEL RDF to identifiers.org Concept resources through the hasConcept property. See OpenBEL/bel.rb#65.

[ncatlett]

short term plan - provide owl:sameAs mappings for bel concept URIs to identifiers.org in separate file

[ncatlett]

prefix	type	openbel uri	miriam collection	identifiers.org	notes
EGID	namespace	http://www.openbel.org/bel/namespace/entrez-gene/	MIR:00000069	http://identifiers.org/ncbigene/
SP	namespace	http://www.openbel.org/bel/namespace/swissprot/	MIR:00000005	http://identifiers.org/uniprot/	uniprot includes swissprot
HGNC	namespace	http://www.openbel.org/bel/namespace/hgnc-human-genes/	MIR:00000080	http://identifiers.org/hgnc/
RGD	namespace	http://www.openbel.org/bel/namespace/rgd-rat-genes/	MIR:00000047	http://identifiers.org/rgd/
MGI	namespace	http://www.openbel.org/bel/namespace/mgi-mouse-genes/	MIR:00000037	http://identifiers.org/mgd/
AFFX	namespace	http://www.openbel.org/bel/namespace/affy-probeset/	MIR:00000394	http://identifiers.org/affy.probeset/	site requires registration and user login
SFAM	namespace	http://www.openbel.org/bel/namespace/selventa-protein-families/	N/A	N/A
GOBP	namespace	http://www.openbel.org/bel/namespace/go-biological-process/	MIR:00000022	http://identifiers.org/go/
GOCC	namespace	http://www.openbel.org/bel/namespace/go-cellular-component/	MIR:00000022	http://identifiers.org/go/
MESHC	namespace	http://www.openbel.org/bel/namespace/mesh-chemicals/	MIR:00000473	http://identifiers.org/mesh.2013/	most recent MeSH not available
MESHCS	namespace; annotation	http://www.openbel.org/bel/namespace/mesh-cellular-structures/	MIR:00000473	http://identifiers.org/mesh.2013/	most recent MeSH not available
MESHD	namespace; annotation	http://www.openbel.org/bel/namespace/mesh-diseases/	MIR:00000473	http://identifiers.org/mesh.2013/	most recent MeSH not available
MESHPP	namespace	http://www.openbel.org/bel/namespace/mesh-processes/	MIR:00000473	http://identifiers.org/mesh.2013/	most recent MeSH not available
MESHA	annotation	http://www.openbel.org/bel/namespace/mesh-anatomy/	MIR:00000473	http://identifiers.org/mesh.2013/	most recent MeSH not available
CL	annotation	http://www.openbel.org/bel/namespace/cell-ontology/	MIR:00000110	http://identifiers.org/cl/
CLO	annotation	http://www.openbel.org/bel/namespace/cell-line-ontology/	can't find in MIRIAM?
DO	namespace; annotation	http://www.openbel.org/bel/namespace/disease-ontology/	MIR:00000233	http://identifiers.org/doid/
CHEBI	namespace	http://www.openbel.org/bel/namespace/chebi/	MIR:00000002	http://identifiers.org/chebi/
TAXON	annotation	http://www.openbel.org/bel/namespace/ncbi-taxonomy/	MIR:00000006	http://identifiers.org/taxonomy/
UBERON	annotation	http://www.openbel.org/bel/namespace/uberon/	MIR:00000446	http://identifiers.org/uberon/
SDIS	namespace	http://www.openbel.org/bel/namespace/selventa-legacy-diseases/	N/A
SCOMP	namespace	http://www.openbel.org/bel/namespace/selventa-named-complexes/	N/A
SCHEM	namespace	http://www.openbel.org/bel/namespace/selventa-legacy-chemicals/	N/A
EFO	annotation	http://www.openbel.org/bel/namespace/experimental-factor-ontology	MIR:00000391	http://identifiers.org/efo/	using for cell line annotations