unable to simulate the GATE

[santoshgate]

messaaage: [Core-0] Initialization of geometry
WARNING: In /usr/local/include/ITK-6.0/itkImageSeriesReader.hxx, line 478
ImageSeriesReader (0x55dec5f3fc50): Non uniform sampling or missing slices detected, maximum nonuniformity:4.50579

GateVImageVolume.cc (l.739): I find R=-1024 in the image, while range stop at -1025

WARNING ### setSkipEqualMaterials at false !! The Geant4 method is not safe since the release 9.5 - Need to be fixed

[tbaudier]

Hello @santoshgate

Can you explain and describe what are you doing please?
How did obtain this error?

I f you need help to run your fist simulation, you can find more information in the doc: https://opengate-python.readthedocs.io/en/latest/

[santoshgate]

doing for Internal dosimetry simulation with DICOM images and TIA dicom,
when simulate error come

[santoshgate]

santosh@DESKTOP-MLM4J4G:~/Gate/build$ ./Gate /home/santosh/Gate_simulations/patient4_simulation/macros/patient4.mac
[G4]
[G4] **************************************************************
[G4] Geant4 version Name: geant4-11-02-patch-02 [MT] (21-June-2024)
[G4] Copyright : Geant4 Collaboration
[G4] References : NIM A 506 (2003), 250-303
[G4] : IEEE-TNS 53 (2006), 270-278
[G4] : NIM A 835 (2016), 186-225
[G4] WWW : http://geant4.org/
[G4] **************************************************************
[G4]
[Core-0] Initialization of geometry
[Core-0] Initialization of physics
[Core-0] Initialization of actors
[Core-0]
[Core-0] *******************************************************
[Core-0] GATE version 9.4 (2024)
[Core-0] Copyright : OpenGATE Collaboration
[Core-0] Reference : Phys. Med. Biol. 49(19) 4543-4561 2004
[Core-0] Reference : Phys. Med. Biol. 56(4) 881-901 2011
[Core-0] Reference : Med. Phys. 41(6) 1-14 2014
[Core-0] Reference : Phys. Med. Biol. 66(10) 1-23 2021
[Core-0] Reference : Frontiers in Physics, 12 2024
[Core-0] http://www.opengatecollaboration.org
[Core-0] *******************************************************
[Core-0]
[Core-0] You are using Geant4 version 11.2.2
[Core-0] Starting macro /home/santosh/Gate_simulations/patient4_simulation/macros/patient4.mac
[Physic-0] The following Geant4's physic-list is enabled :emstandard

List of Enabled processes:

=== Process: IonIonisation ===
Particle: GenericIon
Particle: alpha
Particle: deuteron
Particle: triton
Particle: He3

List of initialized processes:

• GenericIon
  • msc
  • ionIoni
  • Radioactivation
• He3
  • msc
  • ionIoni
• alpha
  • msc
  • ionIoni
• anti_He3
  • msc
  • hIoni
• anti_alpha
  • msc
  • hIoni
• anti_deuteron
  • msc
  • hIoni
• anti_omega-
  • msc
  • hIoni
• anti_proton
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• anti_sigma+
  • msc
  • hIoni
• anti_sigma-
  • msc
  • hIoni
• anti_triton
  • msc
  • hIoni
• anti_xi-
  • msc
  • hIoni
• deuteron
  • msc
  • hIoni
• e+
  • msc
  • eIoni
  • eBrem
  • annihil
  • CoulombScat
• e-
  • msc
  • eIoni
  • eBrem
  • CoulombScat
• gamma
  • GammaGeneralProc
• kaon+
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• kaon-
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• mu+
  • msc
  • muIoni
  • muBrems
  • muPairProd
  • CoulombScat
• mu-
  • msc
  • muIoni
  • muBrems
  • muPairProd
  • CoulombScat
• omega-
  • msc
  • hIoni
• pi+
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• pi-
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• proton
  • msc
  • hIoni
  • hBrems
  • hPairProd
  • CoulombScat
• sigma+
  • msc
  • hIoni
• sigma-
  • msc
  • hIoni
• tau+
  • msc
  • hIoni
• tau-
  • msc
  • hIoni
• triton
  • msc
  • hIoni
  • Radioactivation
• xi-
  • msc
  • hIoni

[Core-0] Initialization of geometry
WARNING: In /usr/local/include/ITK-6.0/itkImageSeriesReader.hxx, line 478
ImageSeriesReader (0x556a5e731930): Non uniform sampling or missing slices detected, maximum nonuniformity:4.50579

GateVImageVolume.cc (l.739): I find R=-1024 in the image, while range stop at -1025

WARNING ### setSkipEqualMaterials at false !! The Geant4 method is not safe since the release 9.5 - Need to be f

[tbaudier]

Your problem is related to Gate 9 (c++ version) and not opengate (python version).
Please, open an issue in that repository:
https://github.com/OpenGATE/Gate