From 047901d02707a8cf16f6645830d321b4ccab5d64 Mon Sep 17 00:00:00 2001
From: Matt Jaquiery <matt.jaquiery@dtc.ox.ac.uk>
Date: Tue, 12 Nov 2024 00:09:58 +0000
Subject: [PATCH] feat: add GitHub CI

- CI tests
- CodeCov for coverage
- README badges
---
 .github/workflows/test.yml | 32 ++++++++++++++++++++++++++++++++
 README.md                  |  3 +++
 requirements.txt           |  1 +
 3 files changed, 36 insertions(+)
 create mode 100644 .github/workflows/test.yml

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 0000000..e0d2cc8
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,32 @@
+on: push
+jobs:
+    test:
+        runs-on: ubuntu-latest
+        strategy:
+          matrix:
+            python-version: [ "3.11", "3.12", "3.13" ]
+        steps:
+          - uses: actions/checkout@v4
+          - name: Set up Python ${{ matrix.python-version }}
+            uses: actions/setup-python@v5
+            with:
+              python-version: ${{ matrix.python-version }}
+              cache: 'pip'
+          - uses: actions/checkout@v4
+          - name: Install dependencies
+            run: pip install -r requirements.txt
+          - name: Install CodeCov dependencies
+            run: pip install pytest pytest-cov
+          - name: Install self
+            run: pip install -e .
+          - name: Run tests
+            run: |
+              cd tests
+              pytest --cov --cov-report=xml
+          - name: Upload coverage to Codecov
+            uses: codecov/codecov-action@v4
+            with:
+              token: ${{ secrets.CODECOV_TOKEN }}
+              file: ./tests/coverage.xml
+              flags: unittests
+              fail_ci_if_error: false
diff --git a/README.md b/README.md
index 6ce2fab..21be1a6 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,8 @@
 # Treatment Resistant Depression Database Command Line Interface
 
+[![.github/workflows/test.yml](https://github.com/OxfordRSE/trd-cli/actions/workflows/test.yml/badge.svg)](https://github.com/OxfordRSE/trd-cli/actions/workflows/test.yml)
+[![codecov](https://codecov.io/github/OxfordRSE/trd-cli/graph/badge.svg?token=myj04HCbDQ)](https://codecov.io/github/OxfordRSE/trd-cli)
+
 This CLI performs automated data collection and curation for the TRD Database project.
 
 ## Deployment
diff --git a/requirements.txt b/requirements.txt
index 2b7c0f5..2a1607e 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -2,3 +2,4 @@
 click==8.1.7
 pycap==2.6.0
 requests==2.32.3
+typing_extensions==4.12.2
\ No newline at end of file