New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adapt match_variants to allow VCF files as input #2

Open

smlmbrt opened this issue Aug 8, 2022 · 0 comments

Labels

Member

smlmbrt commented Aug 8, 2022 •

edited

Loading

Would be useful to be able to match_variants against a set of VCF files. Would require edits to:

pgscatalog_utils/pgscatalog_utils/match/read.py

Line 10 in a6de70c

def read_target(path: str, n_threads: int, remove_multiallelic: bool) -> pl.DataFrame:
pgscatalog_utils/pgscatalog_utils/match/read.py

Line 42 in a6de70c

def _detect_target_format(path: str) -> Target:

smlmbrt added the enhancement label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment