diff --git a/MzidMerger/MzidMerger.csproj b/MzidMerger/MzidMerger.csproj
index 812ab9e..1cdf9fd 100644
--- a/MzidMerger/MzidMerger.csproj
+++ b/MzidMerger/MzidMerger.csproj
@@ -6,7 +6,7 @@
MzidMerger
MzidMerger
MzidMerger
- 1.1.0
+ 1.2.0
$(Version)
$(Version)
Merges mzid[.gz] files into a single mzid[.gz]. Designed for MS-GF+ mzid files (looks for SpecEValue scores)
diff --git a/readme.md b/readme.md
index 021b813..caab3e6 100644
--- a/readme.md
+++ b/readme.md
@@ -13,7 +13,7 @@ MzidMerger uses PSI_Interface.dll for reading and writing the mzids.
## Syntax
-`MzidMerger -inDir "directory path" [-filter "filename filter"] [-out "output file path"] [-maxSpecEValue number] [-keepOnlyBestResults]`
+`MzidMerger -inDir "directory path" [-filter "filename filter"] [-out "output file path"] [-maxSpecEValue number] [-keepOnlyBestResults] [-fixIds]`
### Required parameters:
`-inDir path`
@@ -32,6 +32,9 @@ MzidMerger uses PSI_Interface.dll for reading and writing the mzids.
`-keepOnlyBestResults`
* If specified, only the best-scoring results for each spectrum are kept.
+`-fixIds`
+* Fix the peptide and peptideEvidence IDs. Only use for e.g. older MS-GF+ results, that output many errors about duplicate IDs. Only fixes Peptide and PeptideEvidence IDs.
+
## Contacts
Written by Bryson Gibbons and Matthew Monroe for the Department of Energy (PNNL, Richland, WA) \