Fix xgcm deprecation warnings #1456

Job	Run time
py3.12 \| ubuntu \| unit tests	5m 0s
py3.11 \| ubuntu \| unit tests	4m 51s
mypy	-1s
py${{ matrix.python-version }} \| ${{ matrix.os }} \| integration tests	-1s
merge-test-artifacts	-1s
	9m 48s

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