DOC: Update all `.rst` files to `.md` #1547

Job	Run time
cache-pixi-lock / Generate output	44s
Unit tests: ubuntu \| pixi run -e test-latest tests	2m 26s
Unit tests: ubuntu \| pixi run -e test-py311 tests	2m 18s
Integration: ${{ matrix.os }} \| pixi run -e ${{ matrix.pixi-environment }} tests-notebooks	0s
TypeChecking: pixi run typing	0s
merge-test-artifacts	0s
	5m 28s

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