Merge pull request #1859 from OceanParcels/remove_C_headers

Remove JIT files related to C headers

Author: erikvansebille

.github/workflows/pypi-release.yml

@@ -104,7 +104,7 @@ jobs:
           activate-environment: parcels
           python-version: "3.10"
           channels: conda-forge
-      - run: conda install -c conda-forge c-compiler pip
+      - run: conda install -c conda-forge pip
       - run: pip install parcels --no-cache
       - run: curl https://raw.githubusercontent.com/OceanParcels/parcels/main/docs/examples/example_peninsula.py > example_peninsula.py
       - run: python example_peninsula.py

docs/conf.py

@@ -374,7 +374,6 @@ def linkcode_resolve(domain, info):
 nbsphinx_thumbnails = {
     "examples/tutorial_parcels_structure": "_images/parcels_user_diagram.png",
     "examples/tutorial_timestamps": "_static/calendar-icon.jpg",
-    "examples/tutorial_jit_vs_scipy": "_static/clock-icon.png",
     "examples/documentation_homepage_animation": "_images/homepage.gif",
     "examples/tutorial_interaction": "_static/pulled_particles_twoatractors_line.gif",
     "examples/documentation_LargeRunsOutput": "_static/harddrive.png",

docs/documentation/index.rst

@@ -32,7 +32,6 @@ Parcels has several documentation and tutorial Jupyter notebooks and scripts whi
    :caption: Creating ParticleSets
    :name: tutorial-particlesets
 
-   ../examples/tutorial_jit_vs_scipy.ipynb
    ../examples/tutorial_delaystart.ipynb
 
 

docs/installation.rst

@@ -36,9 +36,6 @@ The steps below are the installation instructions for Linux, macOS and Windows.
 
   python example_peninsula.py --fieldset 100 100
 
-.. note::
-  If you are on macOS and get a compilation error, you may need to accept the Apple xcode license ``xcode-select --install``. If this does not solve the compilation error, you may want to try running ``export CC=gcc``. If the compilation error remains, you may want to check `this solution <https://stackoverflow.com/a/58323411/5172570>`_.
-
 *Optionally:* if you want to run all the examples and tutorials, start Jupyter and open the tutorial notebooks:
 
 .. code-block:: bash

docs/reference.rst

@@ -11,5 +11,4 @@ Parcels API
   User-defined Kernels <reference/userdefined_kernels>
   Particle-particle interaction <reference/interaction>
   Gridsets and grids <reference/grids>
-  C Code Generation <reference/code_generation>
   Miscellaneous <reference/misc>