diff --git a/docs/conf.py b/docs/conf.py index aeacbfff..19f44777 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -78,6 +78,8 @@ "user-guide/assignments/Sail_the_ship": "user-guide/_images/freepik_research_vessel.jpg", "user-guide/assignments/Code_of_conduct": "user-guide/_images/freepik_code_of_conduct.jpg", "user-guide/teacher-content/ILOs": "user-guide/_images/ILOs.jpg", + "user-guide/teacher-content/UU-ocean-of-future/Tutorial1": "user-guide/_images/freepik_assignment.png", + "user-guide/teacher-content/UU-ocean-of-future/Tutorial2": "user-guide/_images/freepik_assignment.png", } sphinx_gallery_conf = {"default_thumb_file": "_static/virtual_ship_logo.png"} diff --git a/docs/user-guide/_images/freepik_assignment.png b/docs/user-guide/_images/freepik_assignment.png new file mode 100644 index 00000000..4201bb71 Binary files /dev/null and b/docs/user-guide/_images/freepik_assignment.png differ diff --git a/docs/user-guide/_images/links.ipynb b/docs/user-guide/_images/links.ipynb index 57849248..a7ae48ae 100644 --- a/docs/user-guide/_images/links.ipynb +++ b/docs/user-guide/_images/links.ipynb @@ -18,7 +18,9 @@ "\n", "[Research_vessel](freepik_research_vessel.jpg)\n", "\n", - "[ILOs](ILOs.jpg)" + "[ILOs](ILOs.jpg)\n", + "\n", + "[Assignment](freepik_assignment.png)" ] } ], diff --git a/docs/user-guide/teacher-content/UU-ocean-of-future/CoordinatesExport-Transect.xlsx b/docs/user-guide/teacher-content/UU-ocean-of-future/CoordinatesExport-Transect.xlsx new file mode 100644 index 00000000..dfd76275 Binary files /dev/null and b/docs/user-guide/teacher-content/UU-ocean-of-future/CoordinatesExport-Transect.xlsx differ diff --git a/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.html b/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.html index 5a1121c2..f900b6ab 100644 --- a/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.html +++ b/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.html @@ -1,591 +1,2158 @@ - - - - - - - - - - - - - - - Ocean observations - - - - - - - - - - - - + + + + + + Ocean observations + + + + + + + + + + + + + + +
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Difficulties of Measuring

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  • Vast Scale: Covers 71% of Earth’s surface, average depth 3,688m
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  • Real-Time Monitoring: Difficulty transmitting data from deep or remote locations
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  • Extreme conditions: Pressure, storms and salt require specialized equipment
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  • Accessibility: Remote locations, harsh weather, high operational costs
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  • Light Limitation: Optical methods only work in top ~200m
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Satellite Observations

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Note that it’s not possible to investigate the interior ocean with satellites

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Satellite Observations

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  • Advantages: +
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    • Global coverage and accessibility
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    • Continuous monitoring of large areas
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    • Cost-effective compared to ship-based surveys
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  • Limitations: +
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    • Affected by atmospheric conditions
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    • Cannot penetrate deep into the ocean
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PACE Satellite (2024)

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Light Attenuation in the Ocean

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Light Attenuation in the Ocean

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  • Remote sensing only observes top few meters of ocean
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  • Cameras and optical instruments are ineffective at depth
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  • Alternative methods required: +
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    • Cabled networks and instruments
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    • Acoustic sensors
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Observation Methods

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HMS Challenger (1872-1876)

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Ship-Based Measurements

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  • CTD Casts: Conductivity, Temperature, and Depth profiling and water samples
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  • Acoustic Doppler Current Profilers (ADCP): Measuring ocean currents
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  • Multibeam Echosounders: High-resolution seafloor mapping
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  • Sediment Cores: Extracting seafloor samples for geological and climate studies
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  • Tows: Biological sampling of plankton and marine organisms
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Benefits of CTD Measurements

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  • High Vertical Resolution: Continuous profiling from surface to seafloor
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  • Targeted Sampling: Niskin bottles collect water at specific depths of interest
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  • Multiple Parameters: Temperature, salinity, depth, plus additional sensors (O₂, chlorophyll, turbidity)
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  • Water Mass Identification: Characterize ocean layers and circulation patterns
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  • Calibration Standard: Validates satellite and autonomous sensor data
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Plankton measurements

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  • Water Sampling
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VirtualShip expedition

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  • 9 days of ship time
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  • Depart and arrive from Texel, Netherlands
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  • Straight transect starting from the deep shelve
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  • Inslingeren: (zeem.) opnieuw wennen aan het zeemansleven
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  • Travel and CTD deployment time
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  • SURF Research Cloud setup by Jamie
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  • Instructions in Jupyter Notebook
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VR and life @ sea

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+ + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - + + + + diff --git a/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.qmd b/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.qmd index 16777361..cc2143b9 100644 --- a/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.qmd +++ b/docs/user-guide/teacher-content/UU-ocean-of-future/Presentation.qmd @@ -4,6 +4,7 @@ subtitle: "Ocean of the future
13-11-2025" author: "Emma Daniels & Jamie Atkins
Postdocs @ UU
Virtual Ship Classroom" format: revealjs: + embed-resources: true slide-number: true theme: sky logo: "https://virtualship.readthedocs.io/en/latest/_static/virtual_ship_logo.png" diff --git a/docs/user-guide/teacher-content/UU-ocean-of-future/Tutorial2.ipynb b/docs/user-guide/teacher-content/UU-ocean-of-future/Tutorial2.ipynb index c73d111f..6f994fcf 100644 --- a/docs/user-guide/teacher-content/UU-ocean-of-future/Tutorial2.ipynb +++ b/docs/user-guide/teacher-content/UU-ocean-of-future/Tutorial2.ipynb @@ -5,6 +5,8 @@ "id": "c6b4d243", "metadata": {}, "source": [ + "# Tutorial 2\n", + "\n", "## Open the notebook CTD transects and run all cells to generate some plots\n", "- modify your data directory\n", "data_dir\n", @@ -20,7 +22,7 @@ "\n", "Oxygen:\n", "- Describe the evolution of oxygen along the transect\n", - "- Can you identify any oxygen minimum zones? Hypoxia?\n", + "- Where is the lowest oxygen found and why do you think this is the case?\n", "\n", "Nitrate: \n", "Is there nearest to land there are very high nitrate values\n", diff --git a/docs/user-guide/teacher-content/index.md b/docs/user-guide/teacher-content/index.md index 864392a5..d1f3eb7b 100644 --- a/docs/user-guide/teacher-content/index.md +++ b/docs/user-guide/teacher-content/index.md @@ -18,18 +18,19 @@ We evaluated in several (under)graduate courses and find that the VirtualShip Cl ```{nbgallery} --- -maxdepth: 1 +maxdepth: 2 caption: Teaching material --- - ILOs.ipynb ``` -## UU Ocean of the Future - ```{nbgallery} --- -maxdepth: 1 +caption: UU Ocean of the Future --- UU-ocean-of-future/Tutorial1.ipynb +UU-ocean-of-future/CoordinatesExport-Transect.xlsx +UU-ocean-of-future/Tutorial2.ipynb +UU-ocean-of-future/CTD_transects.ipynb +UU-ocean-of-future/plot_slider.py ``` diff --git a/docs/user-guide/tutorials/index.md b/docs/user-guide/tutorials/index.md index a235b4a4..f2fab7b4 100644 --- a/docs/user-guide/tutorials/index.md +++ b/docs/user-guide/tutorials/index.md @@ -5,8 +5,10 @@ maxdepth: 1 caption: Post-processing results --- - - +surf_research_cloud_setup.ipynb +surf_collaborative_setup.ipynb +ADCP_data_tutorial.ipynb +CTD_data_tutorial.ipynb Drifter_data_tutorial.ipynb Argo_data_tutorial.ipynb CTD_transects.ipynb