From a9d300aff0553428444fdd2a8649e6f52dd42288 Mon Sep 17 00:00:00 2001 From: Pedro Q Date: Wed, 23 Feb 2022 12:28:37 +0100 Subject: [PATCH] update version, changed default algorithm to heuristic --- mantis/MANTIS.py | 2 +- mantis/__init__.py | 2 +- mantis/__main__.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/mantis/MANTIS.py b/mantis/MANTIS.py index f003628..12c68fc 100644 --- a/mantis/MANTIS.py +++ b/mantis/MANTIS.py @@ -158,7 +158,7 @@ def __init__(self, else: self.minimum_consensus_overlap = 0.7 if domain_algorithm: self.domain_algorithm = domain_algorithm - else: self.domain_algorithm = 'dfs' + else: self.domain_algorithm = 'heuristic' if best_combo_formula: self.best_combo_formula = best_combo_formula else: self.best_combo_formula = 1 diff --git a/mantis/__init__.py b/mantis/__init__.py index ac329c9..4963389 100644 --- a/mantis/__init__.py +++ b/mantis/__init__.py @@ -1 +1 @@ -__version__ = "1.4.7" +__version__ = "1.4.8" diff --git a/mantis/__main__.py b/mantis/__main__.py index 4814173..a2588c5 100644 --- a/mantis/__main__.py +++ b/mantis/__main__.py @@ -46,7 +46,7 @@ def main(): parser.add_argument('-mco', '--minimum_consensus_overlap', help='[optional]\tcustom value for the minimum overlap between hits when generating the consensus annotation. Default is 0.7, 0 to accept any consistent hit, regardless of coordinate overlap.') parser.add_argument('-da', '--domain_algorithm', choices=['dfs', 'heuristic', 'bpo'], - help='[optional]\tChoose how multiple domains should be processed. Default is dfs.') + help='[optional]\tChoose how multiple domains should be processed. Default is heuristic.') parser.add_argument('-tl', '--time_limit', help='[optional]\ttime limit in seconds when running Mantis\' DFS algorithm. Default is 60 seconds') parser.add_argument('-od', '--organism_details',