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Split giftis by hemisphere (#419)
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@tsalo
tsalo authored Jun 3, 2024
1 parent 33a20f5 commit b36f712
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3 changes: 2 additions & 1 deletion aslprep/data/aslprep_bids_config.json
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Expand Up @@ -38,7 +38,8 @@
"sub-{subject}[/ses-{session}]/{datatype<func|perf>|func}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix<regressors|timeseries>|timeseries}{extension<.json|.tsv|.csv|>|.tsv}",
"sub-{subject}[/ses-{session}]/{datatype<perf>|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_desc-{desc}]_{suffix<confounds>}{extension<.tsv|.json>|.tsv}",
"sub-{subject}[/ses-{session}]/{datatype<perf>|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix<asl|aslref|att|cbf|coverage|mask>}{extension<.nii|.nii.gz|.json|.csv|.tsv>|.nii.gz}",
"sub-{subject}[/ses-{session}]/{datatype<perf>|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_den-{den}][_cohort-{cohort}][_desc-{desc}]_{suffix<asl|att|cbf>}{extension<.dtseries.nii|.dscalar.nii|.json|.dscalar.json|.dtseries.json|.func.gii|.func.json>|.dtseries.nii}",
"sub-{subject}[/ses-{session}]/{datatype<perf>|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_den-{den}][_cohort-{cohort}][_desc-{desc}]_{suffix<asl|att|cbf>}{extension<.dtseries.nii|.dscalar.nii|.json|.dscalar.json|.dtseries.json>|.dtseries.nii}",
"sub-{subject}[/ses-{session}]/{datatype<perf>|perf}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_hemi-{hemi<L|R>}][_space-{space}][_res-{res}][_den-{den}][_cohort-{cohort}][_desc-{desc}]_{suffix<asl|att|cbf>}{extension<json|.func.gii>|.func.gii}",
"sub-{subject}[/ses-{session}]/{datatype<figures>|figures}/sub-{subject}[_ses-{session}][_task-{task}][_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}][_space-{space}][_res-{res}][_den-{den}][_cohort-{cohort}][_desc-{desc}]_{suffix<asl|aslref|att|cbf|basil|score|scrub|pvc|mask>}{extension<.svg|.png|.html>|.svg}",
"sub-{subject}/{datatype<figures>}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix<T1w|T2w|T1rho|T1map|T2map|T2star|FLAIR|FLASH|PDmap|PD|PDT2|inplaneT[12]|angio|dseg|mask|dwi|epiref|fieldmap>}{extension<.html|.svg|.png>}",
"sub-{subject}/{datatype<figures>}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_desc-{desc}]_{suffix<dseg|mask|dwi|epiref|fieldmap>}{extension<.html|.svg|.png>}",
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54 changes: 36 additions & 18 deletions aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt
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Expand Up @@ -232,21 +232,39 @@ sub-01/ses-philips2d/perf/sub-01_ses-philips2d_from-aslref_to-T1w_mode-image_xfm
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_from-aslref_to-T1w_mode-image_xfm.txt
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_from-orig_to-aslref_mode-image_xfm.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_from-orig_to-aslref_mode-image_xfm.txt
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basilGM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basilGM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basilWM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basilWM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basil_att.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basil_att.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basil_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-basil_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-scoreTimeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-scoreTimeseries_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-score_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-score_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-scrub_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-scrub_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-timeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_space-fsaverage5_desc-timeseries_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basilGM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basilGM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basilWM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basilWM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basil_att.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basil_att.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basil_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-basil_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-scoreTimeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-scoreTimeseries_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-score_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-score_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-scrub_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-scrub_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-timeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-L_space-fsaverage5_desc-timeseries_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basilGM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basilGM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basilWM_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basilWM_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basil_att.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basil_att.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basil_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-basil_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-scoreTimeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-scoreTimeseries_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-score_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-score_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-scrub_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-scrub_cbf.json
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-timeseries_cbf.func.gii
sub-01/ses-philips2d/perf/sub-01_ses-philips2d_hemi-R_space-fsaverage5_desc-timeseries_cbf.json

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