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Update nibabel requirement from <=5.1 to <=5.2.1 #406

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merged 1 commit into from
Apr 30, 2024

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@dependabot dependabot bot commented on behalf of github Apr 22, 2024

Updates the requirements on nibabel to permit the latest version.

Release notes

Sourced from nibabel's releases.

5.2.1

DOI

Release notes

Bug-fix release in the 5.2.x series.

Enhancements

  • Support "flat" ASCII-encoded GIFTI DataArrays (#1298) (PM, reviewed by CM)

Bug fixes

  • Tolerate missing git when reporting version info (#1286) (CM, reviewed by Yuri Victorovich)
  • Handle Siemens XA30 derived DWI DICOMs (#1296) (CM, reviewed by YOH and Mathias Goncalves)

Maintenance

  • Add tool for generating GitHub-friendly release notes (#1284) (CM)
  • Accommodate pytest 8 changes (#1297) (CM)

Full Changelog: nipy/nibabel@5.2.0...5.2.1

Changelog

Sourced from nibabel's changelog.

5.2.1 (Monday 26 February 2024)

Bug-fix release in the 5.2.x series.

Enhancements

  • Support "flat" ASCII-encoded GIFTI DataArrays (pr/1298) (PM, reviewed by CM)

Bug fixes

  • Tolerate missing git when reporting version info (pr/1286) (CM, reviewed by Yuri Victorovich)
  • Handle Siemens XA30 derived DWI DICOMs (pr/1296) (CM, reviewed by YOH and Mathias Goncalves)

Maintenance

  • Add tool for generating GitHub-friendly release notes (pr/1284) (CM)
  • Accommodate pytest 8 changes (pr/1297) (CM)

5.2.0 (Monday 11 December 2023)

New feature release in the 5.2.x series.

This release requires a minimum Python of 3.8 and NumPy 1.20, and has been tested up to Python 3.12 and NumPy 1.26.

New features

  • Add generic :class:~nibabel.pointset.Pointset and regularly spaced :class:~nibabel.pointset.Grid data structures in preparation for coordinate transformation and resampling (pr/1251) (CM, reviewed by Oscar Esteban)

Enhancements

  • Add :meth:~nibabel.arrayproxy.ArrayProxy.copy method to :class:~nibabel.arrayproxy.ArrayProxy (pr/1255) (CM, reviewed by Paul McCarthy)
  • Permit :meth:~nibabel.xmlutils.XmlSerializable.to_xml methods to pass keyword arguments to :func:xml.etree.ElementTree.tostring (pr/1258) (CM)
  • Allow user expansion (e.g., ~/...) in strings passed to functions that accept paths (pr/1260) (Reinder Vos de Wael, reviewed by CM)
  • Expand CIFTI-2 brain structures to permit synonyms (pr/1256) (CM, reviewed by Mathias Goncalves)
  • Annotate :class:~nibabel.spatialimages.SpatialImage as accepting affine=None argument (pr/1253) (Blake Dewey, reviewed by CM)
  • Warn on invalid MINC2 spacing declarations, treat as missing (pr/1237)

... (truncated)

Commits
  • 1df3b61 REL: 5.2.1
  • 9408ae8 Backport gh-1296: Conditionally drop derived volumes from DWI sequences
  • ee684eb Backport gh-1298: Support "flat" ASCII-encoded GIFTI DataArrays
  • c1ac829 Build(deps): Bump codecov/codecov-action from 3 to 4
  • 5e4f2f9 Build(deps): Bump the actions-infrastructure group with 3 updates
  • 83613ab Backport gh-1297: Accommodate pytest 8 changes
  • 6a2e30c Backport gh-1286: Tolerate missing git
  • 20d51dd MNT: Advertise Python 3.12 support
  • c74794e DOC: Fix intersphinx mapping and reference type
  • 10ba536 Backport gh-1284: Add tool for generating GitHub-friendly release notes
  • Additional commits viewable in compare view

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@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels Apr 22, 2024
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codecov-commenter commented Apr 22, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 79.60%. Comparing base (7bd5e06) to head (6708c80).
Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #406   +/-   ##
=======================================
  Coverage   79.60%   79.60%           
=======================================
  Files          37       37           
  Lines        3986     3986           
  Branches      562      562           
=======================================
  Hits         3173     3173           
  Misses        630      630           
  Partials      183      183           

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tsalo commented Apr 29, 2024

@dependabot rebase

@dependabot dependabot bot force-pushed the dependabot/pip/nibabel-lte-5.2.1 branch 2 times, most recently from 919909d to 66d8954 Compare April 29, 2024 16:21
@tsalo
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tsalo commented Apr 29, 2024

@dependabot rebase

Updates the requirements on [nibabel](https://github.com/nipy/nibabel) to permit the latest version.
- [Release notes](https://github.com/nipy/nibabel/releases)
- [Changelog](https://github.com/nipy/nibabel/blob/master/Changelog)
- [Commits](nipy/nibabel@brifti-0.1...5.2.1)

---
updated-dependencies:
- dependency-name: nibabel
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/nibabel-lte-5.2.1 branch from 66d8954 to 6708c80 Compare April 29, 2024 19:45
@tsalo tsalo merged commit 5b37756 into main Apr 30, 2024
25 checks passed
@dependabot dependabot bot deleted the dependabot/pip/nibabel-lte-5.2.1 branch April 30, 2024 14:18
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