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Update pybids requirement from <=0.16.4 to <=0.16.5 #416

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merged 1 commit into from
Jun 3, 2024

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@dependabot dependabot bot commented on behalf of github May 27, 2024

Updates the requirements on pybids to permit the latest version.

Release notes

Sourced from pybids's releases.

0.16.5

DOI

Release notes

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

What's Changed

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

New Contributors

Full Changelog: bids-standard/pybids@0.16.4...0.16.5

Changelog

Sourced from pybids's changelog.

Version 0.16.5 (May 22, 2024)

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

Version 0.16.4 (November 30, 2023)

Bug-fix release in the 0.16.x series.

This release resolves a bug likely introduced in 0.9.0 (when PyBIDS started using SQL), in which boolean metadata fields with values of False were read in as True.

  • FIX: Ensure values of boolean metadata fields are preserved (#1034)
  • FIX: update config for PET tracer entity (#1018)
  • ENH: Clearer BIDSValidation error message (#1023)
  • STY: pacify codespell (#1029)
  • CI: Build(deps): Bump bids-examples from 064db11 to b6e5234 (#1031)
  • CI: Build(deps): Bump bids-examples from d039879 to 064db11 (#1028)
  • CI: Build(deps): Bump bids-examples from bfcc5c6 to d039879 (#1027)
  • CI: Bump bids-examples from 502c917 to bfcc5c6 (#1026)
  • CI: Bump bids-examples from 1c30c6e to 502c917 (#1025)
  • CI: Bump bids-examples from e857597 to 1c30c6e (#1021)
  • CI: Bump bids-examples from c557d1f to e857597 (#1019)
  • CI: Bump bids-examples from 75968b9 to c557d1f (#1011)
  • CI: Bump actions/checkout from 3 to 4 (#1024)

Version 0.16.3 (August 16, 2023)

Bug-fix release in the 0.16.x series.

... (truncated)

Commits
  • 7796c63 Merge pull request #1064 from bids-standard/rel/0.16.5
  • c744cec chore(test-pypi): Avoid failures on duplicate commit counts
  • 7b1f451 doc(changes): 0.16.5 release notes
  • 1220667 chore(zenodo): Update Zenodo file
  • ba4d0ac chore(mailmap): Add Basile Pinsard
  • 20007e5 Merge pull request #1057 from effigies/mnt/py312
  • ec017e7 CI: Run tests on Python 3.12
  • 4f1a161 FIX: Avoid rounding up for very small epsilons
  • 16c551a MNT: Use jinja2 PackageLoader instead of pkg_resources
  • 87eecc5 Merge pull request #1049 from alperkent/master
  • Additional commits viewable in compare view

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Updates the requirements on [pybids](https://github.com/bids-standard/pybids) to permit the latest version.
- [Release notes](https://github.com/bids-standard/pybids/releases)
- [Changelog](https://github.com/bids-standard/pybids/blob/master/CHANGELOG.rst)
- [Commits](bids-standard/pybids@0.0.1...0.16.5)

---
updated-dependencies:
- dependency-name: pybids
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels May 27, 2024
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 84.34%. Comparing base (94f8890) to head (343ad53).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #416   +/-   ##
=======================================
  Coverage   84.34%   84.34%           
=======================================
  Files          37       37           
  Lines        3986     3986           
=======================================
  Hits         3362     3362           
  Misses        624      624           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@tsalo tsalo merged commit 33a20f5 into main Jun 3, 2024
25 checks passed
@dependabot dependabot bot deleted the dependabot/pip/pybids-lte-0.16.5 branch June 3, 2024 13:34
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