diff --git a/Dockerfile b/Dockerfile index 52e5a9a..9bd2d5c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -176,6 +176,13 @@ COPY --from=afni /opt/afni-latest /opt/afni-latest COPY --from=workbench /opt/workbench /opt/workbench COPY --from=c3d /opt/convert3d/bin/c3d_affine_tool /usr/bin/c3d_affine_tool +# Download atlases from AtlasPack +RUN mkdir /AtlasPack +COPY --from=atlaspack /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ +COPY --from=atlaspack /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ +COPY --from=atlaspack /AtlasPack/atlas-4S*.tsv /AtlasPack/ +COPY --from=atlaspack /AtlasPack/*.json /AtlasPack/ + # Simulate SetUpFreeSurfer.sh ENV OS="Linux" \ FS_OVERRIDE=0 \