From 05549b8864ec4fbfb1fe587de495c7b459c6fd59 Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Thu, 11 Apr 2024 13:46:03 -0400
Subject: [PATCH] Update Dockerfile

---
 Dockerfile | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/Dockerfile b/Dockerfile
index 52e5a9a..9bd2d5c 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -176,6 +176,13 @@ COPY --from=afni /opt/afni-latest /opt/afni-latest
 COPY --from=workbench /opt/workbench /opt/workbench
 COPY --from=c3d /opt/convert3d/bin/c3d_affine_tool /usr/bin/c3d_affine_tool
 
+# Download atlases from AtlasPack
+RUN mkdir /AtlasPack
+COPY --from=atlaspack /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/
+COPY --from=atlaspack /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/
+COPY --from=atlaspack /AtlasPack/atlas-4S*.tsv /AtlasPack/
+COPY --from=atlaspack /AtlasPack/*.json /AtlasPack/
+
 # Simulate SetUpFreeSurfer.sh
 ENV OS="Linux" \
     FS_OVERRIDE=0 \