From 6972fe93e110ef54481c1b769e4a964d64a5c69c Mon Sep 17 00:00:00 2001
From: Taylor Salo <salot@pennmedicine.upenn.edu>
Date: Thu, 3 Oct 2024 10:14:59 -0400
Subject: [PATCH] Install more shared libraries (#37)

* Update Dockerfile

* Update Dockerfile
---
 Dockerfile | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 18cfa20..eb42918 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -89,7 +89,8 @@ RUN apt-get update && \
     apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
 # Install AFNI latest (neurodocker build)
-# Need to symlink libXpm.so.4.11.0 to libXp.so.6 because AFNI expects libXp.so.6.
+# Need to symlink libXpm.so.4.11.0 (libxpm4) to libXp.so.6 for AFNI.
+# Need to symlink libpng16.so.16.37.0 (libpng16-16) to libpng12.so.0 for AFNI.
 RUN apt-get update -qq \
 && apt-get install -y -q --no-install-recommends \
        apt-utils \
@@ -101,6 +102,7 @@ RUN apt-get update -qq \
        libglw1-mesa \
        libgomp1 \
        libjpeg62 \
+       libpng16-16 \
        libxm4 \
        libxpm4 \
        netpbm \
@@ -108,6 +110,7 @@ RUN apt-get update -qq \
        xfonts-base \
        xvfb \
 && ln -s /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0 /usr/lib/x86_64-linux-gnu/libXp.so.6 \
+&& ln -s /usr/lib/x86_64-linux-gnu/libpng16.so.16.37.0 /usr/lib/x86_64-linux-gnu/libpng12.so.0 \
 && echo "Downloading AFNI ..." \
 && mkdir -p /opt/afni-latest \
 && curl -fsSL --retry 5 https://afni.nimh.nih.gov/pub/dist/tgz/linux_openmp_64.tgz \
@@ -148,6 +151,7 @@ COPY --from=build_fsl /usr/lib/fsl/5.0/libutils.so /opt/fsl/lib/libutils.so
 COPY --from=build_fsl /usr/lib/fsl/5.0/libprob.so /opt/fsl/lib/libprob.so
 COPY --from=build_fsl /usr/lib/libnewmat.so.10.0.0 /opt/fsl/lib/libnewmat.so.10
 COPY --from=build_fsl /usr/lib/libniftiio.so.2 /opt/fsl/lib/libniftiio.so.2
+COPY --from=build_fsl /usr/lib/libznz.so.2 /opt/fsl/lib/libznz.so.2
 # Install applywarp from FSL for UK Biobank data
 COPY --from=build_fsl /usr/lib/fsl/5.0/applywarp /opt/fsl/lib/applywarp