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Split up env declarations. (#9)
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tsalo authored Feb 13, 2023
1 parent 16d2039 commit 6a52040
Showing 1 changed file with 6 additions and 4 deletions.
10 changes: 6 additions & 4 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -105,14 +105,16 @@ RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/frees
--exclude='freesurfer/trctrain'

ENV FREESURFER_HOME="/opt/freesurfer" \
FSF_OUTPUT_FORMAT="nii.gz" \
FUNCTIONALS_DIR="$FREESURFER_HOME/sessions" \
FSF_OUTPUT_FORMAT="nii.gz"

ENV FUNCTIONALS_DIR="$FREESURFER_HOME/sessions" \
LOCAL_DIR="$FREESURFER_HOME/local" \
MINC_BIN_DIR="$FREESURFER_HOME/mni/bin" \
MINC_LIB_DIR="$FREESURFER_HOME/mni/lib" \
MNI_DIR="$FREESURFER_HOME/mni" \
MNI_DATAPATH="$FREESURFER_HOME/mni/data" \
MNI_PERL5LIB="$MINC_LIB_DIR/perl5/5.8.5" \
MNI_DATAPATH="$FREESURFER_HOME/mni/data"

ENV MNI_PERL5LIB="$MINC_LIB_DIR/perl5/5.8.5" \
PERL5LIB="$MINC_LIB_DIR/perl5/5.8.5" \
SUBJECTS_DIR="$FREESURFER_HOME/subjects" \
PATH="$FREESURFER_HOME/bin:$FREESURFER_HOME/tktools:$MINC_BIN_DIR:$PATH"
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