Merge pull request #112 from PrincetonUniversity/adjoint-simulations

Adjoint simulations
PrincetonUniversity · Oct 11, 2024 · 9ca7f27 · 9ca7f27
2 parents 853c25b + 813fb4f
commit 9ca7f27
Show file tree

Hide file tree

Showing 1,332 changed files with 237,685 additions and 19,971 deletions.
diff --git a/.github/workflows/unittests.yml b/.github/workflows/unittests.yml
@@ -14,9 +14,9 @@ jobs:
         run: git submodule init
           &&  git submodule update
       - name: Configure
-        run: cmake -S . -B build -DBUILD_TESTS=ON
+        run: cmake -S . -B build -D CMAKE_BUILD_TYPE=Release -D BUILD_TESTS=ON
       - name: Build
         run: cmake --build build
       - name: Run all tests
         run: cd build/tests/unit-tests
-          && ctest
+          && ctest --verbose
diff --git a/.gitignore b/.gitignore
@@ -23,3 +23,7 @@ examples/*/Par_File
 *.sqlite
 *.nsys-rep
 *.ncu-rep
+.snakemake/
+autotuning/
+profiles
+.cache/
diff --git a/.jenkins/regression_tests.gvy b/.jenkins/regression_tests.gvy
diff --git a/.jenkins/unittests.gvy b/.jenkins/unittests.gvy
@@ -75,7 +75,7 @@ pipeline {
                                     sh """
                                         module load boost/1.73.0
                                         cd build_GNU_${CMAKE_HOST_NAME}_${CMAKE_DEVICE_NAME}_${env.GIT_COMMIT}/tests/unit-tests
-                                        srun -N 1 -t 00:20:00 ${HOST_RUN_FLAGS} ${DEVICE_RUN_FLAGS} bash -c 'export OMP_PROC_BIND=spread; export OMP_THREADS=places; ctest; ctest --rerun-failed --output-on-failure;'
+                                        srun -N 1 -t 00:20:00 ${HOST_RUN_FLAGS} ${DEVICE_RUN_FLAGS} bash -c 'export OMP_PROC_BIND=spread; export OMP_THREADS=places; ctest --verbose;'
                                     """
                                 }
                             }
@@ -154,7 +154,7 @@ pipeline {
                                         module load boost/1.73.0
                                         module load intel/2022.2.0
                                         cd build_INTEL_${CMAKE_HOST_NAME}_${CMAKE_DEVICE_NAME}_${env.GIT_COMMIT}/tests/unit-tests
-                                        srun -N 1 -t 00:20:00 ${HOST_RUN_FLAGS} ${DEVICE_RUN_FLAGS} bash -c 'export OMP_PROC_BIND=spread; export OMP_THREADS=places; ctest -E "DISPLACEMENT_TESTS"; ctest --rerun-failed --output-on-failure; ./displacement_newmark_tests'
+                                        srun -N 1 -t 00:20:00 ${HOST_RUN_FLAGS} ${DEVICE_RUN_FLAGS} bash -c 'export OMP_PROC_BIND=spread; export OMP_THREADS=places; ctest --verbose;'
                                     """
                                 }
                             }

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -15,3 +15,14 @@ repos:
     hooks:
       - id: clang-format
         types_or: [c++]
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.6.7
+    hooks:
+      # Run the linter.
+      - id: ruff
+        types_or: [ python, pyi ]
+        args: [ --fix ]
+      # Run the formatter.
+      - id: ruff-format
+        types_or: [ python, pyi ]