diff --git a/README.md b/README.md index cf5fab1..35907fb 100644 --- a/README.md +++ b/README.md @@ -52,7 +52,7 @@ snakemake --cores 4 -p --use-conda ; ``` ## Using the database for proteomic searches -Once you obtain a list of peptide-spectrum matches (PSMs), you can use a pipeline provided in the \([PeptideAnnotator](https://github.com/ProGenNo/ProHap_PeptideAnnotator)\) repository to map the peptides back to the respective protein haplotype / variant sequences, and map the identified variants back to their genetic origin. For the usage and details, please refer to the following [wiki page](https://github.com/ProGenNo/ProHap/wiki/Using-the-database-for-proteomic-searches). +Once you obtain a list of peptide-spectrum matches (PSMs), you can use a pipeline provided in the [PeptideAnnotator](https://github.com/ProGenNo/ProHap_PeptideAnnotator) repository to map the peptides back to the respective protein haplotype / variant sequences, and map the identified variants back to their genetic origin. For the usage and details, please refer to the following [wiki page](https://github.com/ProGenNo/ProHap/wiki/Using-the-database-for-proteomic-searches). ## Output The ProHap / ProVar pipeline produces three kinds of output files. Below is a brief description, please refer to the [wiki page](https://github.com/ProGenNo/ProHap/wiki/Output-files) for further details.