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Merge formatting and apply test improvements
- Accept auto-formatting from /black - Apply test improvements: cleaner mocks and MRI validation Signed-off-by: Hitendrasinh Rathod <[email protected]>
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monai/tests/test_clinical_preprocessing.py

Lines changed: 6 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -97,8 +97,7 @@ def test_unsupported_modality():
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@patch("monai.transforms.clinical_preprocessing.LoadImage")
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def test_modality_case_insensitivity(mock_load):
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"""Test case-insensitive modality handling with whitespace trimming."""
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mock_image = Mock()
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mock_load.return_value = Mock(return_value=mock_image)
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mock_load.return_value = Mock(return_value=Mock())
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test_cases = ["CT", "ct", "Ct", "CT ", " CT", "MR", "mr", "MRI", "mri", " MrI "]
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@@ -112,8 +111,7 @@ def test_modality_case_insensitivity(mock_load):
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@patch("monai.transforms.clinical_preprocessing.LoadImage")
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def test_mr_modality_distinct(mock_load):
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"""Test MR modality is handled separately from MRI."""
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mock_image = Mock()
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mock_load.return_value = Mock(return_value=mock_image)
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mock_load.return_value = Mock(return_value=Mock())
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result = preprocess_dicom_series("dummy.dcm", "MR")
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assert result is not None
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result2 = preprocess_medical_image("dummy.dcm", "MR")
@@ -123,8 +121,7 @@ def test_mr_modality_distinct(mock_load):
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@patch("monai.transforms.clinical_preprocessing.LoadImage")
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def test_edge_cases(mock_load):
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"""Test edge cases for modality input."""
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mock_image = Mock()
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mock_load.return_value = Mock(return_value=mock_image)
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mock_load.return_value = Mock(return_value=Mock())
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with pytest.raises(UnsupportedModalityError):
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preprocess_dicom_series("dummy.dcm", "")
@@ -150,20 +147,14 @@ def test_preprocess_dicom_series_integration(tmp_path):
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assert hasattr(result, "shape")
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assert len(result.shape) == 4 # (C, H, W, D)
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assert result.shape[0] == 1 # single channel
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if modality == "CT":
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# CT output should be in [0, 1] due to ScaleIntensityRange
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assert result.min() >= 0.0
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assert result.max() <= 1.0
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elif modality in ["MR", "MRI"]:
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# NormalizeIntensity should yield mean≈0, std≈1 for nonzero voxels
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nonzero_mask = result != 0
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if nonzero_mask.any():
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assert abs(result[nonzero_mask].mean()) < 0.1
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assert abs(result[nonzero_mask].std() - 1.0) < 0.2
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result2 = preprocess_medical_image(str(test_file), modality)
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assert result2 is not None
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assert hasattr(result2, "shape")
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assert len(result2.shape) == 4
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assert result2.shape[0] == 1
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assert result2.shape[0] == 1

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