Merge branch 'dev' into 8328-nnunet-bundle-integration

Author: SimoneBendazzoli93

monai/transforms/io/array.py

@@ -11,7 +11,6 @@
 """
 A collection of "vanilla" transforms for IO functions.
 """
-
 from __future__ import annotations
 
 import inspect

runtests.sh

@@ -728,7 +728,7 @@ if [ $doDistTests = true ]
 then
     echo "${separator}${blue}run distributed unit test cases${noColor}"
     torch_validate
-    for i in tests/test_*_dist.py
+    for i in  $(find ./tests/ -name "*_dist.py")
     do
         echo "$i"
         ${cmdPrefix}${cmd} "$i"
@@ -740,7 +740,7 @@ if [ $doNetTests = true ]
 then
     set +e  # disable exit on failure so that diagnostics can be given on failure
     echo "${separator}${blue}integration${noColor}"
-    for i in tests/*integration_*.py
+    for i in tests/integration/*.py
     do
         echo "$i"
         ${cmdPrefix}${cmd} "$i"

tests/apps/__init__.py

@@ -0,0 +1,10 @@
+# Copyright (c) MONAI Consortium
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#     http://www.apache.org/licenses/LICENSE-2.0
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.

tests/apps/deepedit/__init__.py

@@ -0,0 +1,10 @@
+# Copyright (c) MONAI Consortium
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#     http://www.apache.org/licenses/LICENSE-2.0
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.

tests/test_deepedit_transforms.py …pps/deepedit/test_deepedit_transforms.pytests/test_deepedit_transforms.py renamed to tests/apps/deepedit/test_deepedit_transforms.py tests/test_deepedit_transforms.py renamed to tests/apps/deepedit/test_deepedit_transforms.py

@@ -0,0 +1,10 @@
+# Copyright (c) MONAI Consortium
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#     http://www.apache.org/licenses/LICENSE-2.0
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.

tests/apps/deepgrow/__init__.py

@@ -0,0 +1,10 @@
+# Copyright (c) MONAI Consortium
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#     http://www.apache.org/licenses/LICENSE-2.0
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.