Merge remote-tracking branch 'upstream/dev' into 8185-tests-refactor

Author: garciadias

monai/data/meta_tensor.py

@@ -607,3 +607,8 @@ def print_verbose(self) -> None:
         print(self)
         if self.meta is not None:
             print(self.meta.__repr__())
+
+
+# needed in later versions of Pytorch to indicate the class is safe for serialisation
+if hasattr(torch.serialization, "add_safe_globals"):
+    torch.serialization.add_safe_globals([MetaTensor])

requirements-dev.txt

@@ -18,7 +18,7 @@ pep8-naming
 pycodestyle
 pyflakes
 black>=22.12
-isort>=5.1,<6
+isort>=5.1, <6.0
 ruff
 pytype>=2020.6.1; platform_system != "Windows"
 types-setuptools

requirements.txt

@@ -1,2 +1,2 @@
-torch>=1.9,<2.5.1
+torch>=1.9,<2.6
 numpy>=1.24,<2.0

tests/inferers/test_zarr_avg_merger.py

@@ -260,31 +260,33 @@
     TENSOR_4x4,
 ]
 
+ALL_TESTS = [
+    TEST_CASE_0_DEFAULT_DTYPE,
+    TEST_CASE_1_DEFAULT_DTYPE,
+    TEST_CASE_2_DEFAULT_DTYPE,
+    TEST_CASE_3_DEFAULT_DTYPE,
+    TEST_CASE_4_DEFAULT_DTYPE,
+    TEST_CASE_5_VALUE_DTYPE,
+    TEST_CASE_6_COUNT_DTYPE,
+    TEST_CASE_7_COUNT_VALUE_DTYPE,
+    TEST_CASE_8_DTYPE,
+    TEST_CASE_9_LARGER_SHAPE,
+    TEST_CASE_10_DIRECTORY_STORE,
+    TEST_CASE_11_MEMORY_STORE,
+    TEST_CASE_12_CHUNKS,
+    TEST_CASE_16_WITH_LOCK,
+    TEST_CASE_17_WITHOUT_LOCK,
+]
+
+# add compression tests only when using Zarr version before 3.0
+if not version_geq(get_package_version("zarr"), "3.0.0"):
+    ALL_TESTS += [TEST_CASE_13_COMPRESSOR_LZ4, TEST_CASE_14_COMPRESSOR_PICKLE, TEST_CASE_15_COMPRESSOR_LZMA]
+
 
 @unittest.skipUnless(has_zarr and has_numcodecs, "Requires zarr (and numcodecs) packages.)")
 class ZarrAvgMergerTests(unittest.TestCase):
-    @parameterized.expand(
-        [
-            TEST_CASE_0_DEFAULT_DTYPE,
-            TEST_CASE_1_DEFAULT_DTYPE,
-            TEST_CASE_2_DEFAULT_DTYPE,
-            TEST_CASE_3_DEFAULT_DTYPE,
-            TEST_CASE_4_DEFAULT_DTYPE,
-            TEST_CASE_5_VALUE_DTYPE,
-            TEST_CASE_6_COUNT_DTYPE,
-            TEST_CASE_7_COUNT_VALUE_DTYPE,
-            TEST_CASE_8_DTYPE,
-            TEST_CASE_9_LARGER_SHAPE,
-            TEST_CASE_10_DIRECTORY_STORE,
-            TEST_CASE_11_MEMORY_STORE,
-            TEST_CASE_12_CHUNKS,
-            TEST_CASE_13_COMPRESSOR_LZ4,
-            TEST_CASE_14_COMPRESSOR_PICKLE,
-            TEST_CASE_15_COMPRESSOR_LZMA,
-            TEST_CASE_16_WITH_LOCK,
-            TEST_CASE_17_WITHOUT_LOCK,
-        ]
-    )
+
+    @parameterized.expand(ALL_TESTS)
     def test_zarr_avg_merger_patches(self, arguments, patch_locations, expected):
         codec_reg = numcodecs.registry.codec_registry
         if "compressor" in arguments: