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Fixes # .
### Description
A few sentences describing the changes proposed in this pull request.
### Checks
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applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`
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Signed-off-by: Can Zhao <[email protected]>
| Brats18 | MAIS VAE |**0.026**|**0.977**|**39.003**|**0h**|
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|| Dedicated VAE | 0.030 | 0.975| 38.971 | 672h |
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**Table 2:** Performance comparison of the `MAIS VAE` model on out-of-distribution datasets (i.e., unseen during MAISI VAE training) versus `Dedicated VAE` models (i.e., train from scratch on in-distribution data). The “GPU” column shows additional GPU hours for training with one 32G V100 GPU. MAISI VAE model achieved comparable results without additional GPU resource expenditure on unseen datasets.
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@@ -140,12 +140,28 @@ The information for the inference input, such as the body region and anatomy to
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#### Recommended spacing for different output sizes:
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|`output_size`| Recommended `"spacing"`|
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|:-----:|:-----:|
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[256, 256, 256] | [1.5, 1.5, 1.5] |
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[512, 512, 128] | [0.8, 0.8, 2.5] |
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[512, 512, 512] | [1.0, 1.0, 1.0] |
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According to the statistics of the training data, we have recommended input parameters for the body region that are included in the training data.
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The Recommended `"output_size"` is the median value of the training data, the Recommended `"spacing"` is the median FOV (the product of `"output_size"` and `"spacing"`) divided by the Recommended `"output_size"`.
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|`"body_region"`|percentage of training data |Recommended `"output_size"`| Recommended `"spacing"`[mm]|
If users want to try different `"output_size"`, please adjust `"spacing"` to ensure a reasonable FOV, which is the product of `"output_size"` and `"spacing"`.
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