.gitignore

## Ignore C++ intermediates and outputs
## https://raw.githubusercontent.com/github/gitignore/master/C%2B%2B.gitignore

#
# Prerequisites
*.d

# Compiled Object files
*.slo
*.lo
*.o
*.obj

# Precompiled Headers
*.gch
*.pch

# Compiled Dynamic libraries
*.so
*.dylib
#*.dll

# Fortran module files
*.mod
*.smod

# Compiled Static libraries
*.lai
*.la
*.a
*.lib

# Executables
*.exe
*.out
*.app


## Ignore Visual Studio temporary files, build results, and
## files generated by popular Visual Studio add-ons.
##
## Get latest from https://github.com/github/gitignore/blob/master/VisualStudio.gitignore

# User-specific files
*.suo
*.user
*.userosscache
*.sln.docstates

# User-specific files (MonoDevelop/Xamarin Studio)
*.userprefs

# Build results
[Dd]ebug/
[Dd]ebugPublic/
[Rr]elease/
[Rr]eleases/
#x64/
#x86/
bld/
[Bb]in/
[Oo]bj/
[Ll]og/

# Visual Studio 2015/2017 cache/options directory
.vs/
# Uncomment if you have tasks that create the project's static files in wwwroot
#wwwroot/

# Visual Studio 2017 auto generated files
Generated\ Files/

# MSTest test Results
[Tt]est[Rr]esult*/
[Bb]uild[Ll]og.*

# NUNIT
*.VisualState.xml
TestResult.xml

# Build Results of an ATL Project
[Dd]ebugPS/
[Rr]eleasePS/
dlldata.c

# Benchmark Results
BenchmarkDotNet.Artifacts/

# .NET Core
project.lock.json
project.fragment.lock.json
artifacts/
**/Properties/launchSettings.json

# StyleCop
StyleCopReport.xml

# Files built by Visual Studio
*_i.c
*_p.c
*_i.h
*.ilk
*.meta
*.obj
*.pch
*.pdb
*.pgc
*.pgd
*.rsp
*.sbr
*.tlb
*.tli
*.tlh
*.tmp
*.tmp_proj
*.vspscc
*.vssscc
.builds
*.pidb
*.svclog
*.scc

# Chutzpah Test files
_Chutzpah*

# Visual C++ cache files
ipch/
*.aps
*.ncb
*.opendb
*.opensdf
*.sdf
*.cachefile
*.VC.db
*.VC.VC.opendb

# Visual Studio profiler
*.psess
*.vsp
*.vspx
*.sap

# Visual Studio Trace Files
*.e2e

# TFS 2012 Local Workspace
$tf/

# Guidance Automation Toolkit
*.gpState

# ReSharper is a .NET coding add-in
_ReSharper*/
*.[Rr]e[Ss]harper
*.DotSettings.user

# JustCode is a .NET coding add-in
.JustCode

# TeamCity is a build add-in
_TeamCity*

# DotCover is a Code Coverage Tool
*.dotCover

# AxoCover is a Code Coverage Tool
.axoCover/*
!.axoCover/settings.json

# Visual Studio code coverage results
*.coverage
*.coveragexml

# NCrunch
_NCrunch_*
.*crunch*.local.xml
nCrunchTemp_*

# MightyMoose
*.mm.*
AutoTest.Net/

# Web workbench (sass)
.sass-cache/

# Installshield output folder
[Ee]xpress/

# DocProject is a documentation generator add-in
DocProject/buildhelp/
DocProject/Help/*.HxT
DocProject/Help/*.HxC
DocProject/Help/*.hhc
DocProject/Help/*.hhk
DocProject/Help/*.hhp
DocProject/Help/Html2
DocProject/Help/html

# Click-Once directory
publish/

# Publish Web Output
*.[Pp]ublish.xml
*.azurePubxml
# Note: Comment the next line if you want to checkin your web deploy settings,
# but database connection strings (with potential passwords) will be unencrypted
*.pubxml
*.publishproj

# Microsoft Azure Web App publish settings. Comment the next line if you want to
# checkin your Azure Web App publish settings, but sensitive information contained
# in these scripts will be unencrypted
PublishScripts/

# NuGet Packages
*.nupkg
# The packages folder can be ignored because of Package Restore
**/[Pp]ackages/*
# except build/, which is used as an MSBuild target.
!**/[Pp]ackages/build/
# Uncomment if necessary however generally it will be regenerated when needed
#!**/[Pp]ackages/repositories.config
# NuGet v3's project.json files produces more ignorable files
*.nuget.props
*.nuget.targets

# Microsoft Azure Build Output
csx/
*.build.csdef

# Microsoft Azure Emulator
ecf/
rcf/

# Windows Store app package directories and files
AppPackages/
BundleArtifacts/
Package.StoreAssociation.xml
_pkginfo.txt
*.appx

# Visual Studio cache files
# files ending in .cache can be ignored
*.[Cc]ache
# but keep track of directories ending in .cache
!*.[Cc]ache/

# Others
ClientBin/
~$*
*~
*.dbmdl
*.dbproj.schemaview
*.jfm
*.pfx
*.publishsettings
orleans.codegen.cs

# Including strong name files can present a security risk 
# (https://github.com/github/gitignore/pull/2483#issue-259490424)
#*.snk

# Since there are multiple workflows, uncomment next line to ignore bower_components
# (https://github.com/github/gitignore/pull/1529#issuecomment-104372622)
#bower_components/

# RIA/Silverlight projects
Generated_Code/

# Backup & report files from converting an old project file
# to a newer Visual Studio version. Backup files are not needed,
# because we have git ;-)
_UpgradeReport_Files/
Backup*/
UpgradeLog*.XML
UpgradeLog*.htm
ServiceFabricBackup/

# SQL Server files
*.mdf
*.ldf
*.ndf

# Business Intelligence projects
*.rdl.data
*.bim.layout
*.bim_*.settings
*.rptproj.rsuser

# Microsoft Fakes
FakesAssemblies/

# GhostDoc plugin setting file
*.GhostDoc.xml

# Node.js Tools for Visual Studio
.ntvs_analysis.dat
node_modules/

# Visual Studio 6 build log
*.plg

# Visual Studio 6 workspace options file
*.opt

# Visual Studio 6 auto-generated workspace file (contains which files were open etc.)
*.vbw

# Visual Studio LightSwitch build output
**/*.HTMLClient/GeneratedArtifacts
**/*.DesktopClient/GeneratedArtifacts
**/*.DesktopClient/ModelManifest.xml
**/*.Server/GeneratedArtifacts
**/*.Server/ModelManifest.xml
_Pvt_Extensions

# Paket dependency manager
.paket/paket.exe
paket-files/

# FAKE - F# Make
.fake/

# JetBrains Rider
.idea/
*.sln.iml

# CodeRush
.cr/

# Python Tools for Visual Studio (PTVS)
__pycache__/
*.pyc

# Cake - Uncomment if you are using it
# tools/**
# !tools/packages.config

# Tabs Studio
*.tss

# Telerik's JustMock configuration file
*.jmconfig

# BizTalk build output
*.btp.cs
*.btm.cs
*.odx.cs
*.xsd.cs

# OpenCover UI analysis results
OpenCover/

# Azure Stream Analytics local run output 
ASALocalRun/

# MSBuild Binary and Structured Log
*.binlog

# NVidia Nsight GPU debugger configuration file
*.nvuser

/build-nt-x86
/*.log
/libraries/boost_1_*
/libraries/expat*
/libraries/hdf5*
/libraries/freetype*
/libraries/libgd*
/libraries/libpng*
/libraries/msparser_2_8_1_x86_win64
/libraries/zlib*
Version.cpp
/pwiz_tools/BiblioSpec/tests/inputs
/pwiz_tools/BiblioSpec/tests/output
/pwiz_tools/SeeMS/**/AssemblyInfo.cs
/pwiz_tools/MSConvertGUI/**/AssemblyInfo.cs
/pwiz_tools/Bumbershoot/**/*Version.cpp
/pwiz_tools/Bumbershoot/**/AssemblyInfo.cpp
/pwiz_tools/Bumbershoot/**/AssemblyInfo.cs
/pwiz_tools/Bumbershoot/idpicker/Resources/Resources.*
/pwiz_tools/Skyline/Executables/SkylineBatch/SkylineBatch/Properties/AssemblyInfo.cs

# Vendor reader test data extracted from tarballs (newer data should be committed directly to git)
/pwiz/data/vendor_readers/*/Reader*Test.data/**/1SRef
/pwiz/data/vendor_readers/*/Reader*Test.data/**.raw
/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.data
/pwiz/data/vendor_readers/UIMF/Reader_UIMF_Test.data

# Files that get extracted from vendor reader distros
/pwiz_aux/msrc/utility/vendor_api/**/*.dll
/pwiz_aux/msrc/utility/vendor_api/*/EULA.*
/pwiz_aux/msrc/utility/vendor_api/ABI/LicenseKey.h
/pwiz_aux/msrc/utility/vendor_api/Agilent/x64/
/pwiz_aux/msrc/utility/vendor_api/Agilent/x86/
/pwiz_aux/msrc/utility/vendor_api/Bruker/BAF2SQL-README.txt
/pwiz_aux/msrc/utility/vendor_api/Bruker/BAF2SQL-THIRD-PARTY-LICENSE-README.txt
/pwiz_aux/msrc/utility/vendor_api/Bruker/THIRD-PARTY-LICENSE-README.txt
/pwiz_aux/msrc/utility/vendor_api/Bruker/x64/
/pwiz_aux/msrc/utility/vendor_api/Bruker/x86/
/pwiz_aux/msrc/utility/vendor_api/Bruker/**/*.h
/pwiz_aux/msrc/utility/vendor_api/Shimadzu/*.xml
/pwiz_aux/msrc/utility/vendor_api/Shimadzu/*.txt
/pwiz_aux/msrc/utility/vendor_api/Waters/MassLynx*.h*
/pwiz_aux/msrc/utility/vendor_api/thermo/ThermoFisher.CommonCore.RawFileReader.xml
/pwiz_aux/msrc/utility/vendor_api/thermo/ThermoFisher.CommonCore.MassPrecisionEstimator.xml
/pwiz_aux/msrc/utility/vendor_api/thermo/ThermoFisher.CommonCore.Data.xml
/pwiz_aux/msrc/utility/vendor_api/thermo/ThermoFisher.CommonCore.BackgroundSubtraction.xml

# Skyline generated files
/pwiz_tools/Skyline/ProtocolBuffers/GeneratedCode/*.cs
/pwiz_tools/Skyline/ProtocolBuffers/tmp/*.cs
/pwiz_tools/Skyline/SkylineTester test list.txt
/pwiz_tools/Skyline/SkylineTester.log
SkylineTester Results
/b64.bat
/b32.bat
/bs64.bat
/bs32.bat
/bso64.bat
/bso32.bat
/SignAfterPublishPW.bat
/OnyxTOFMS.试验.wiff.scan
/160109_Mix1_calcurve_074_raw.skyl
/160109_Mix1_calcurve_074_raw.skyd
/160109_Mix1_calcurve_074_raw
/160109_Mix1_calcurve_073_mzML.skyl
/160109_Mix1_calcurve_073_mzML.skyd
/160109_Mix1_calcurve_073_mzML
/160109_Mix1_calcurve_071_raw.skyl
/160109_Mix1_calcurve_071_raw.skyd
/160109_Mix1_calcurve_071_raw
/160109_Mix1_calcurve_070_mzML.skyl
/160109_Mix1_calcurve_070_mzML.skyd
/160109_Mix1_calcurve_070_mzML
/REP02_CE_Vantage_15mTorr_0001_REP2_02_raw.skyl
/REP02_CE_Vantage_15mTorr_0001_REP2_02_raw.skyd
/REP02_CE_Vantage_15mTorr_0001_REP2_02_raw
/REP02_CE_Vantage_15mTorr_0001_REP2_01_raw.skyl
/REP02_CE_Vantage_15mTorr_0001_REP2_01_raw.skyd
/REP02_CE_Vantage_15mTorr_0001_REP2_01_raw
/REP01_CE_Vantage_15mTorr_0001_REP1_02_raw.skyl
/REP01_CE_Vantage_15mTorr_0001_REP1_02_raw.skyd
/REP01_CE_Vantage_15mTorr_0001_REP1_02_raw
/REP01_CE_Vantage_15mTorr_0001_REP1_01_raw.skyl
/REP01_CE_Vantage_15mTorr_0001_REP1_01_raw.skyd
/REP01_CE_Vantage_15mTorr_0001_REP1_01_raw
/pwiz_tools/Skyline/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/SkylineCmd/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/SkylineNightly/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/SkylineNightlyShim/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/SkylineTester/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/TestRunner/Properties/AssemblyInfo.cs
/pwiz_tools/Skyline/Executables/Installer/FileList64.txt
/pwiz_tools/Skyline/TestSettings_x??.testsettings
/pwiz_tools/Skyline/SignAfterPublishPW.bat
/BrowseOnly
/x64/BrowseOnly
/qb64.bat
/pwiz_tools/Skyline/Test/ProtocolBuffers/GeneratedCode/*.cs
/pwiz_tools/Skyline/Test/ProtocolBuffers/tmp/*.cs
/pwiz_tools/Skyline/Test/ProtocolBuffers/tmp
/pwiz_aux/msrc/utility/vendor_api/ABI/SCIEX.Apis.Data.v1.xml