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btobersbtobers
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Notebooks updated for compatibility with new ConfigManager class
2 parents 9042e31 + 0e5275e commit a40ec8d

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8 files changed

+277
-385
lines changed

8 files changed

+277
-385
lines changed

‎advanced_test.ipynb‎

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‎advanced_test_tw.ipynb‎

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‎analyze_mcmc.ipynb‎

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@@ -22,7 +22,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
@@ -36,12 +36,12 @@
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"from scipy.stats import norm, gamma, truncnorm, gaussian_kde\n",
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"from scipy.stats import gaussian_kde\n",
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"# pygem imports\n",
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"import pygem.setup.config as config\n",
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"# check for config\n",
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"config.ensure_config()\n",
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"from pygem.setup.config import ConfigManager\n",
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"# instantiate ConfigManager\n",
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"config_manager = ConfigManager()\n",
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"# read the config\n",
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"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"# set some plotting defaults\n",
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"plt.rcParams[\"font.family\"] = \"arial\"\n",
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"plt.rcParams['font.size'] = 10\n",

‎analyze_mcmc_regional.ipynb‎

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@@ -53,7 +53,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"id": "5d6d5f58",
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"metadata": {},
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"outputs": [],
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"import xarray as xr\n",
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"import matplotlib.image as mpimg\n",
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"# pygem imports\n",
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"import pygem.setup.config as config\n",
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"# check for config\n",
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"config.ensure_config()\n",
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"from pygem.setup.config import ConfigManager\n",
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"# instantiate ConfigManager\n",
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"config_manager = ConfigManager()\n",
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"# read the config\n",
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"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"import pygem.pygem_modelsetup as modelsetup\n",
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"from pygem import mcmc\n",
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"from pygem.shop import oib\n",

‎analyze_regional_change.ipynb‎

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@@ -36,20 +36,20 @@
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"### imports ###\n",
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"import os, sys, glob\n",
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"# pygem imports\n",
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"import pygem.pygem_modelsetup as modelsetup\n",
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"import pygem.setup.config as config\n",
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"# check for config\n",
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"config.ensure_config()\n",
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"from pygem.setup.config import ConfigManager\n",
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"# instantiate ConfigManager\n",
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"config_manager = ConfigManager()\n",
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"# read the config\n",
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"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first."
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"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first."
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]
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},
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{

‎run_calibration.ipynb‎

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"### imports ###\n",
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"import os, sys, glob, json\n",
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"# pygem imports\n",
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"import pygem.setup.config as config\n",
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"# check for config\n",
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"config.ensure_config()\n",
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"from pygem.setup.config import ConfigManager\n",
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"# instantiate ConfigManager\n",
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"config_manager = ConfigManager()\n",
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"# read the config\n",
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"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"rootpath=pygem_prms['root']"
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]
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},

‎run_simulation.ipynb‎

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"### imports ###\n",
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"import os, sys, glob, json\n",
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"# pygem imports\n",
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"import pygem.setup.config as config\n",
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"\n",
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"# check for config\n",
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"config.ensure_config()\n",
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"from pygem.setup.config import ConfigManager\n",
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"# instantiate ConfigManager\n",
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"config_manager = ConfigManager()\n",
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"# read the config\n",
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"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
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" # the appropriate location. If any errors occur, check this first.\n",
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"rootpath=pygem_prms['root']"
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]
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},

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