pypaftoltest

#!/usr/bin/env python

import sys
import unittest

import paftol
import paftol.tools


class TestPypaftol(unittest.TestCase):

    def test_dataframe(self):
	dataFrame = paftol.tools.DataFrame(['x', 'y'])
	dataFrame.addRow({'x': 1,'y': 2})
	dataFrame.addRow({'x': 2,'y': 3})
	dataFrame.addRow({'x': 3,'y': 4})
	m = dataFrame.colMeanAndStddev('x')
	self.assertEqual(m.mean, 2)

    def test_blastrunner(self):
        tblastnRunner = paftol.tools.TblastnRunner()
	a = tblastnRunner.makeBlastArgv('blastprg', 'blastdb.fasta')
	self.assertEqual(a, ['blastprg', '-db', 'blastdb.fasta', '-outfmt', '5'])
	# sys.stderr.write('%s\n' % str(a))


class TestSomething(unittest.TestCase):

    def setUp(self):
        sys.stderr.write('setting up something\n')

    def test_something(self):
        sys.stderr.write('testing something\n')


if __name__ == '__main__':
    unittest.main()