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Insert classes representing anatomical regions of interest #2

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cuboideum opened this issue Apr 23, 2021 · 0 comments
Open

Insert classes representing anatomical regions of interest #2

cuboideum opened this issue Apr 23, 2021 · 0 comments
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enhancement New feature or request

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@cuboideum
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I have created classes about anatomical regions of interest that are needed for the standards skeletal inventory for complete skeletons using the 'template' function of the obo tool ROBOT. The definitions can be found in the following file (which comes in a ZIP archive because GitHub does not support OWL files in comments):

standards-si-ROIs.zip

These definitions need to be inserted by copy and paste into the file standards-si.owl. Here, they belong into the 'Classes' section, starting with the following lines:

<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/OBI_0000963 -->

An example for a class definition is the following:

<!-- http://w3id.org/rdfbones/ext/standards-si/Acetabulum -->
<owl:Class rdf:about="http://w3id.org/rdfbones/ext/standards-si/Acetabulum">
<rdfs:subClassOf rdf:resource="http://w3id.org/rdfbones/ext/standards-si/SegmentOfHipBone"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/sig/ont/fma/regional_part_of"/>
<owl:allValuesFrom rdf:resource="http://purl.org/sig/ont/fma/fma16585"/> <!-- 'Hip bone' -->
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An anatomical region of interest describing the articular surface of the hip bone that is part of the hip joint.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Felix Engel</obo:IAO_0000119>
<obo:IAO_0000116 xml:lang="en">This anatomical region of interest defines the same zone of a bone organ as the FMA class &apos;Acetabulum&apos; (fma:16579).</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Felix Engel</obo:IAO_0000117>
<rdfs:label xml:lang="en">Acetabulum</rdfs:label>
</owl:Class>

The class definitions are alphabetically ordered, based on their URIs. The definitions from the file need to be inserted so that they fit into this ordering.

Please copy and paste only the 201 class definitions from the standards-si namespace (http://w3id.org/rdfbones/ext/standards-si/) that are not yet contained in 'standards-si.owl'.

@cuboideum cuboideum added the enhancement New feature or request label Apr 23, 2021
@15E601 15E601 mentioned this issue Apr 27, 2021
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