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Error in confidence level estimation #93

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hechth opened this issue Nov 15, 2021 · 0 comments

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bug

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hechth commented Nov 15, 2021 •

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Using the HMDB database with ions removed, running one of the test datasets on galaxy causes an error during confidence level estimation.

Joining, by = "peak"
Error in $<-.data.frame(*tmp*, "Module_RTclust", value = c("_7", "_7", :
replacement has 750 rows, data has 500
Calls: source ... FUN -> get_confidence_stage4 -> $<- -> $<-.data.frame
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted

The run also uses a nearly complete adduct list, so likely goes into some previously not encountered execution path.

See the shared history: https://umsa.cerit-sc.cz/u/hechth/h/lc-workflow-galaxy-page

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hechth added the bug label

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