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Formatting_PDprogressionGWAS.log
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nohup: ignoring input
-- Attaching packages --------------------------------------- tidyverse 1.2.1 --
v ggplot2 3.2.1 v purrr 0.3.2
v tibble 2.1.3 v dplyr 0.8.3
v tidyr 1.0.0 v stringr 1.4.0
v readr 1.3.1 v forcats 0.4.0
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x dplyr::between() masks data.table::between()
x dplyr::filter() masks stats::filter()
x dplyr::first() masks data.table::first()
x dplyr::lag() masks stats::lag()
x dplyr::last() masks data.table::last()
x purrr::transpose() masks data.table::transpose()
Loading required package: BSgenome
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:dplyr':
combine, intersect, setdiff, union
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:dplyr':
first, rename
The following object is masked from 'package:tidyr':
expand
The following objects are masked from 'package:data.table':
first, second
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following objects are masked from 'package:dplyr':
collapse, desc, slice
The following object is masked from 'package:purrr':
reduce
The following object is masked from 'package:data.table':
shift
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'XVector'
The following object is masked from 'package:purrr':
compact
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: rtracklayer
Registered S3 method overwritten by 'R.oo':
method from
throw.default R.methodsS3
[1] "Formatting: base_DEMENTIA"
Joining, by = "SNP"
[1] "Formatting: base_DEPR"
Joining, by = "SNP"
[1] "Formatting: base_DYSKINESIAS"
Joining, by = "SNP"
[1] "Formatting: base_MOTORFLUX"
Joining, by = "SNP"
[1] "Formatting: surv_DEMENTIA"
Joining, by = "SNP"
[1] "Formatting: surv_DEPR"
Joining, by = "SNP"
[1] "Formatting: surv_DYSKINESIAS"
Joining, by = "SNP"
[1] "Formatting: surv_MOTORFLUX"
Joining, by = "SNP"
Warning messages:
1: Column `CHR` joining factor and character vector, coercing into character vector
2: Column `CHR` joining factor and character vector, coercing into character vector
3: Column `CHR` joining factor and character vector, coercing into character vector
4: Column `CHR` joining factor and character vector, coercing into character vector
5: Column `CHR` joining factor and character vector, coercing into character vector
6: Column `CHR` joining factor and character vector, coercing into character vector
7: Column `CHR` joining factor and character vector, coercing into character vector
8: Column `CHR` joining factor and character vector, coercing into character vector