Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Extract transcription from new version of ensembl GRCH37 issue #14

Open
gaom001 opened this issue Mar 17, 2022 · 0 comments
Open

Extract transcription from new version of ensembl GRCH37 issue #14

gaom001 opened this issue Mar 17, 2022 · 0 comments

Comments

@gaom001
Copy link

gaom001 commented Mar 17, 2022

From CAVA-1.2.3/ensembl_db -i transcripts.txt -e <version> -o custom_transcripts command, it will automaticlly pick up the GRCH38 version of ensembl transcripts (for example: 105, the latest version) . Is there any way to select GRCH37 or GRCH38?

Thanks!
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@gaom001