You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, thanks very much for this. You are absolutely right and your suggested fix looks perfect. We are going to add this to the next stable CAVA release.
If next time you have a feedback/suggestion, could you please post it to the CAVA User Group so that all users registered there would be able to see it?: https://groups.google.com/forum/#!forum/cava-user-group
Many thanks again for your feedback.
Hello- It seems that CAVA throws an exception if the input VCF file has no records. This is what I get:
I think a vcf with no records is a legitimate input so I fixed this on my local copy by adding this check just after https://github.com/RahmanTeam/CAVA/blob/master/cava.py#L416 :
In this way cava writes out the VCF header and exits clean.
Maybe it should be fixed in the master as well?
The text was updated successfully, but these errors were encountered: