From baa49900ffbf64d1d59e6ddf88f75ccd7cea82cd Mon Sep 17 00:00:00 2001 From: Svetlana Kutuzova Date: Thu, 26 Oct 2023 15:01:51 +0200 Subject: [PATCH] fix: folders in CI --- .github/workflows/cli_vamb.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/cli_vamb.yml b/.github/workflows/cli_vamb.yml index 4cd06432..dbf57d84 100644 --- a/.github/workflows/cli_vamb.yml +++ b/.github/workflows/cli_vamb.yml @@ -43,14 +43,14 @@ jobs: - name: Run TaxVAMB run: | vamb bin taxvamb --outdir outdir_taxvamb --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -pe 10 -pt 10 -e 10 -q -t 10 -o C --minfasta 200000 - ls -la outdir_vamb - cat outdir_vamb/log.txt + ls -la outdir_taxvamb + cat outdir_taxvamb/log.txt vamb bin taxvamb --outdir outdir_taxvamb_no_predict --no_predictor --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -e 10 -q -t 10 -o C --minfasta 200000 - ls -la outdir_vamb_no_predict - cat outdir_vamb_no_predict/log.txt + ls -la outdir_taxvamb_no_predict + cat outdir_taxvamb_no_predict/log.txt vamb bin taxvamb --outdir outdir_taxvamb_preds --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy_predictions outdir_taxvamb/results_taxonomy_predictor.csv -e 10 -q -t 10 -o C --minfasta 200000 - ls -la outdir_vamb_preds - cat outdir_vamb_preds/log.txt + ls -la outdir_taxvamb_preds + cat outdir_taxvamb_preds/log.txt - name: Run Taxometer run: | vamb taxometer --outdir outdir_taxometer --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -pe 10 -pt 10