Rename yml to yaml_rms, because it was specific to RMS

This allows the Cantera yaml writer to live alongside it

Author: Nora-Khalil

rmgpy/rmg/main.py

@@ -83,7 +83,7 @@
 from rmgpy.thermo.thermoengine import submit
 from rmgpy.tools.plot import plot_sensitivity
 from rmgpy.tools.uncertainty import Uncertainty, process_local_results
-from rmgpy.yml import RMSWriter
+from rmgpy.yaml_rms import RMSWriter
 
 ################################################################################
 

rmgpy/yml.py renamed to rmgpy/yaml_rms.py

@@ -49,15 +49,15 @@
 from rmgpy.util import make_output_subdirectory
 
 
-def convert_chemkin_to_yml(chemkin_path, dictionary_path=None, output="chem.rms"):
+def convert_chemkin_to_rms(chemkin_path, dictionary_path=None, output="chem.rms"):
     if dictionary_path:
         spcs, rxns = load_chemkin_file(chemkin_path, dictionary_path=dictionary_path)
     else:
         spcs, rxns = load_chemkin_file(chemkin_path)
     write_yml(spcs, rxns, path=output)
 
 
-def write_yml(spcs, rxns, solvent=None, solvent_data=None, path="chem.yml"):
+def write_rms(spcs, rxns, solvent=None, solvent_data=None, path="chem.rms"):
     result_dict = get_mech_dict(spcs, rxns, solvent=solvent, solvent_data=solvent_data)
     with open(path, 'w') as f:
         yaml.dump(result_dict, stream=f)
@@ -279,5 +279,5 @@ def update(self, rmg):
         solvent_data = None
         if rmg.solvent:
             solvent_data = rmg.database.solvation.get_solvent_data(rmg.solvent)
-        write_yml(rmg.reaction_model.core.species, rmg.reaction_model.core.reactions, solvent=rmg.solvent, solvent_data=solvent_data,
+        write_rms(rmg.reaction_model.core.species, rmg.reaction_model.core.reactions, solvent=rmg.solvent, solvent_data=solvent_data,
                   path=os.path.join(self.output_directory, 'rms', 'chem{}.rms').format(len(rmg.reaction_model.core.species)))