diff --git a/rres-endpoints/config/datasets/plants-lite-58-cfg.sh b/rres-endpoints/config/datasets/plants-lite-58-cfg.sh new file mode 100644 index 0000000..d59c7d3 --- /dev/null +++ b/rres-endpoints/config/datasets/plants-lite-58-cfg.sh @@ -0,0 +1,38 @@ +# /home/data/knetminer/etl-test/plants-lite/58/generic/knowledge-network-free.oxl + +# Unfortunately, there isn't consistence, so we can use KETL_DATASET_ID here +oxl_home="$KNET_HOME/etl-test/plants-lite/$KETL_DATASET_VERSION" + +export KETL_SRC_OXL="$oxl_home/generic/knowledge-network.oxl" + +export KETL_OUT="$KETL_OUT_HOME/$KETL_DATASET_ID/$KETL_DATASET_VERSION" + +## Neo  +# +export KETL_HAS_NEO4J=true +export KETL_NEO_VERSION='5.20.0' +export NEO4J_HOME="$KNET_SOFTWARE/neo4j-community-$KETL_NEO_VERSION-etl" + +## Knet Initialiser +# +# The name within the code base, which identifies the config dir to be +# used for the KnetMiner initialiser +export KNET_INIT_DATASET_ID="plants-lite" + + +##### Values for server-sync.sh +# + +## RRes Neo server +#export KNET_NEO_SSH=neo4j@babvs65.rothamsted.ac.uk +#export KNET_NEO_DATA=/opt/data + + +## RRes Test instances for Knetminer +# + +# Test servers like babvs73 +#export KNET_TESTINST_DATA_PATH=/opt/data/knetminer-datasets/plants-lite-ci +# babvs73: based on old Traverser, available at knetminer.com/ci-test +# babvs72: based on Neo4j+OXL Traverser, available at knetminer.com/ci-test-cypher +#export KNET_TESTINST_SSH="brandizim@babvs73.rothamsted.ac.uk brandizim@babvs72.rothamsted.ac.uk" diff --git a/rres-endpoints/config/datasets/plants-lite-58-metadata-descriptor.properties b/rres-endpoints/config/datasets/plants-lite-58-metadata-descriptor.properties new file mode 100644 index 0000000..e7acc0f --- /dev/null +++ b/rres-endpoints/config/datasets/plants-lite-58-metadata-descriptor.properties @@ -0,0 +1,17 @@ +# These files are passed to the Ondex Metadata descriptor tool. +# https://github.com/Rothamsted/knetbuilder/tree/master/ondex-knet-builder/modules/rdf-export-2 +# +datasetId = plants-lite +datasetAccession = KnetMiner:Plants-Lite +datasetTitle = Knetminer's knowledge graph about plants +datasetDescription = \ + Knetminer is a gene discovery platform, which allows for exploring knwoledge graphs computed \ + from common plant biology data, such as ENSEMBL, UniProt, TAIR, PUBMED and more.\n\ + The plants lite dataset contains information about the several gramineae species, which is also linked \ + to embedded data about the Arabidopsis model organism.\n\ + This is the free edition, which includes Arabidopsis, rice, wheat, camelina and rapeseed. +datasetVersion = 58 +# TODO: better URLs +datasetURL = https://knetminer.com/about +datasetNeo4jBrowserURL = +datasetNeo4jBOLTURL =