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New gene annotation releases #459

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davmlaw opened this issue Aug 24, 2021 · 2 comments
Closed

New gene annotation releases #459

davmlaw opened this issue Aug 24, 2021 · 2 comments

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@davmlaw
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davmlaw commented Aug 24, 2021

New releases:

Ensembl GRCh37 - now new releases since 87 (which we already have)
Ensembl GRCh38 - 102, 103, 104

RefSeq GRCh37 - no new releases since 105.20201022 (which we already have)
RefSeq GRCh38 - 109.20210226 and 109.20210514

Create a new script to make it easy, and add to main ones in "genes/scripts"

davmlaw added a commit that referenced this issue Aug 25, 2021
@davmlaw
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davmlaw commented Aug 25, 2021

Instructions:

This may take ~30 mins - you can run the system in the meantime.

cd /mnt/variantgrid_setup_data/gene_annotation  # Or wherever you want to put annotation files
${VARIANTGRID_DIR}/genes/scripts/updates/210824_new_annotations.sh

Make a data migration that reminds people to run this

@davmlaw
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davmlaw commented Oct 18, 2021

This is now obsolete as we import JSON gene annotations (covered in manual migration as part of issue #494)

@davmlaw davmlaw closed this as completed Oct 18, 2021
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