From 1d7d2381ecb823da4dce50cedf6251313ced0a0e Mon Sep 17 00:00:00 2001 From: Marten Chaillet <58044494+McHaillet@users.noreply.github.com> Date: Wed, 7 Aug 2024 22:53:04 +0200 Subject: [PATCH] site updates: fix some usage informations, make authorship clear, add logo (#212) * add name to copyright * remove sticky tabs and add small icon * fix typo * update citation and statement about authors * actually include the logo with the repo * update usage page and FAQ (about reconstruction methods) * remove old link * switch back to sticky tabs --- README.md | 25 +++++------------------ docs/Frequently-asked-questions-(FAQ).md | 6 +++++- docs/Usage.md | 9 ++++---- docs/images/60S_masked.png | Bin 0 -> 187758 bytes docs/index.md | 8 ++++---- docs/tutorials/Tutorial.md | 2 +- mkdocs.yml | 5 +++-- 7 files changed, 23 insertions(+), 32 deletions(-) create mode 100755 docs/images/60S_masked.png diff --git a/README.md b/README.md index b6f152dc..f457318c 100644 --- a/README.md +++ b/README.md @@ -2,10 +2,11 @@ [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10728422.svg)](https://doi.org/10.5281/zenodo.10728422) -# pytom-match-pick: GPU template matching for cryo-ET +# pytom-match-pick -GPU template matching, originally developed in [PyTom](https://github.com/SBC-Utrecht/PyTom), as a standalone python package that is run from the command -line. +GPU-accelerated template matching for cryo-electron tomography, originally developed in [PyTom](https://github.com/SBC-Utrecht/PyTom), as a standalone Python package that is run from the command line. + +This software is developed by Marten L. Chaillet ([@McHaillet](https://github.com/McHaillet)) and Sander Roet ([@sroet](https://github.com/sroet)) in the group of Friedrich Förster at Utrecht University. ![cover_image](docs/images/tomo200528_100_illustration.png) @@ -141,23 +142,7 @@ Contributions to the project are very welcome! Feel free to make a pull request ## Citation -For a reference on GPU accelerated template matching in tomograms please see the [IJMS publication](https://www.mdpi.com/1422-0067/24/17/13375). - - -``` -@Article{ijms241713375, - AUTHOR = {Chaillet, Marten L. and van der Schot, Gijs and Gubins, Ilja and Roet, Sander and Veltkamp, Remco C. and Förster, Friedrich}, - TITLE = {Extensive Angular Sampling Enables the Sensitive Localization of Macromolecules in Electron Tomograms}, - JOURNAL = {International Journal of Molecular Sciences}, - VOLUME = {24}, - YEAR = {2023}, - NUMBER = {17}, - ARTICLE-NUMBER = {13375}, - URL = {https://www.mdpi.com/1422-0067/24/17/13375}, - ISSN = {1422-0067}, - DOI = {10.3390/ijms241713375} -} -``` +Chaillet, M. L., van der Schot, G., Gubins, I., Roet, S., Veltkamp, R. C., & Förster, F. (2023). Extensive angular sampling enables the sensitive localization of macromolecules in electron tomograms. _International Journal of Molecular Sciences_, 24(17), 13375.