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Copy pathexampleCode2runBlastinHydra.txt
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exampleCode2runBlastinHydra.txt
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hydra-login01 login: steierj
[email protected]'s password:
---------------------------------------------------------------------------
Welcome to the SI/HPC cluster Hydra-6, running BCM 9.1 (CentOS 7.9)
---------------------------------------------------------------------------
This is one of the login nodes.
+===========================================================================+
| You must change your password every 180 days. |
| Your account will be locked if it is inactive for 180+14 days, |
| as per https://confluence.si.edu/display/HPC/Changing+your+Hydra+Password |
| or use https://hydra-6.si.edu/ssp/ |
+===========================================================================+
----------------------------------------------------------------------------
+ Questions or Problems:
email [email protected] for sys-admin related issues,
[email protected] for Bioinformatic/Genomics questions,
[email protected] for SAO users who need help.
[steierj@hydra-login01 ~]$ cd /pool/genomics/steierj/Blasts
[steierj@hydra-login01 Blasts]$ mkdir FY18Surifish
[steierj@hydra-login01 Blasts]$ cd FY18Surifish
[steierj@hydra-login01 FY18Surifish]$ mkdir 12S
[steierj@hydra-login01 FY18Surifish]$ cd 12S
[steierj@hydra-login01 12S]$ module load tools/ffsend
#Uploaded .fasta file on send.vis.ee and obtained link to paste below
[steierj@hydra-login01 12S]$ ffdownload https://send.vis.ee/download/95223dd0b9ca24f8/#jcFaCk1ouAbTXOFVWn5RVg
Download complete
# Uploaded .job file on send.vis.ee and obtained link to paste below
[steierj@hydra-login01 12S]$ ffdownload https://send.vis.ee/download/726504e381fb30c0/#KTZnK-TkmKoxot-WRK_8BQ
Download complete
# Run job
[steierj@hydra-login01 12S]$ ls
FY18Surifish12Sblast.job FY18Surifish12S.fasta
[steierj@hydra-login01 12S]$ qsub FY18Surifish12Sblast.job
Your job 4221361 ("FY18Surifish12S1blast") has been submitted
# Waited for job to run, when complete->
[steierj@hydra-login01 12S]$ ls
FY18Surifish12Sblast.job FY18Surifish12Sblast.log FY18Surifish12SBlastResults.tsv FY18Surifish12S.fasta
[steierj@hydra-login01 12S]$ ffupload FY18Surifish12SBlastResults.tsv
Upload complete
https://send.vis.ee/download/cf66af395141204f/#VX6IqrKio7QULynq0WOCVQ
# Logout
[steierj@hydra-login01 12S]$ exit
logout
Connection to hydra-login01.cm.cluster closed.
Session closed.