v0.5.1

What's Changed

Main change is unit support when accessing and assigning instance properties.

Other changes:

• Removed some errors in html generation using doxygen by @jesper-friis in #727
• Modify the mongodb storage by @terence-coudert in #772
• Unit support when accessing and assigning properties by @jesper-friis in #744
• Revert github download/upload artifacts actions back to v3 by @jesper-friis in #776

Full Changelog: v0.5.0...v0.5.1

v0.5.0

What's Changed

The relations in a collection now has a fourth field, the datatype in case the object is a literal. This makes it possible to use a collection as a triplestore without loss of information. The version is bumped to v0.5 since this creates a not fully backward compatible change in the C code.

Other changes include:

• Bump actions by @dependabot
• Fix potential crash rdf plugin by @jesper-friis in #759
• Update doc requirements by @jesper-friis in #775
• Fix loading collection with instance_from_dict() by @jesper-friis in #749
• Move test entities and input and output files to sub-directories by @jesper-friis in #731
• Add datatype to collection by @jesper-friis in #755
• [Auto-generated] Update dependencies by @TEAM4-0 in #725

Full Changelog: v0.4.6...v0.5.0

Changelog

v0.5.0 (2024-01-24)

Full Changelog

Closed issues:

• Cannot load collection with instance_from_dict() #750
• Add datatype to collection #741
• Move all entities used for tests in the entities folder #689

Merged pull requests:

• Update doc requirements #775 (jesper-friis)
• Bump actions/cache from 3 to 4 #771 (dependabot[bot])
• Update sphinx-copybutton requirement from ~=0.5.1 to ~=0.5.2 #766 (dependabot[bot])
• Bump SINTEF/ci-cd from 2.7.1 to 2.7.2 #764 (dependabot[bot])
• Update sphinx-toggleprompt requirement from ~=0.4.0 to ~=0.5.2 #763 (dependabot[bot])
• Fix invalid db.xml file can crash rdf plugin #759 (jesper-friis)
• Add datatype to collection #755 (jesper-friis)
• Bump actions/deploy-pages from 3 to 4 #752 (dependabot[bot])
• Bump actions/upload-pages-artifact from 2 to 3 #751 (dependabot[bot])
• Fix loading collection with instance_from_dict() #749 (jesper-friis)
• Bump actions/upload-artifact from 3 to 4 #747 (dependabot[bot])
• Bump actions/download-artifact from 3 to 4 #746 (dependabot[bot])
• Bump SINTEF/ci-cd from 2.6.0 to 2.7.1 #740 (dependabot[bot])
• Bump actions/setup-python from 4 to 5 #737 (dependabot[bot])
• Bump actions/deploy-pages from 2 to 3 #735 (dependabot[bot])
• Bump actions/configure-pages from 3 to 4 #734 (dependabot[bot])
• Move test entities and input and output files to sub-directories #731 (jesper-friis)
• [Auto-generated] Update dependencies #725 (TEAM4-0)
• Update sphinx-design requirement from ~=0.3.0 to ~=0.5.0 #724 (dependabot[bot])
• Update sphinxcontrib-plantuml requirement from ~=0.24 to ~=0.27 #723 (dependabot[bot])
• Update sphinx-book-theme requirement from ~=0.3.3 to ~=1.0.1 #722 (dependabot[bot])
• Update sphinx requirement from <5,>=4.5.0 to >=4.5.0,<8 #721 (dependabot[bot])

* This Changelog was automatically generated by github_changelog_generator

v0.4.6

What's Changed

• Fix typo in CMakeLists.txt when installing dlite-validate by @jesper-friis in #703
• Do not free the librdf world if called from atexit handler. by @jesper-friis in #700
• Changed assertment for invalid json to error by @jesper-friis in #698
• Updated setup.py to read requirements from requirements.txt by @jesper-friis in #697
• Updated gitignore files by @jesper-friis in #695
• Update nbclient requirement from <0.9,>=0.2 to >=0.2,<0.10 by @dependabot in #707
• Automatic detect virtualenv by @jesper-friis in #696
• Added uninstall cmake target by @jesper-friis in #694
• Avoid adding new states to session while freeing all states. by @jesper-friis in #713
• Cleaned up checking whether we are in an atexit handler by @jesper-friis in #718
• Patching virtualenv activate.sh for multiple Python versions by @jesper-friis in #664
• Updated setting default CMAKE_INSTALL_PREFIX such that it is only set once by @jesper-friis in #715
• Created a human readable error message for missing units. by @jesper-friis in #708
• Improved error codes by @jesper-friis in #719
• Added refcounting to storages by @jesper-friis in #716
• Make json serialisation of collections more readable by @jesper-friis in #726
• Applied general fixes from PR 667 by @jesper-friis in #720
• Updated README file for python storage plugins by @jesper-friis in #733
• Fix "make uninstall" by @jesper-friis in #728
• Apply last changes from PR #667 by @jesper-friis in #736
• Added tests for both new and old instance formats by @jesper-friis in #730
• Added high-quality random number generators by @jesper-friis in #745
• Added dockerfile for building with Ubuntu and minimal requirements by @jesper-friis in #729
• Added image plugin by @jesper-friis in #732
• Print DLite errors in color by default by @jesper-friis in #748
• Try to test for Python 3.12 on Windows by @jesper-friis in #742
• Added support for Python 3.12 via manylinux_x_y by @jesper-friis in #739
• Improve compiling on Ubuntu by @jesper-friis in #753
• Avoid duplication of error messages by @jesper-friis in #758
• Fix issues when compiling without Python by @jesper-friis in #761
• Updated error documentation by @jesper-friis in #760

Full Changelog: v0.4.5...v0.4.6

Changelog

v0.4.6 (2024-01-18)

Full Changelog

Closed issues:

• Avoid duplication of error messages #757
• make uninstall does not remove dlite-validate #714
• Tests are not skipped when building with minimal requirements #711
• Install blas on musl linux docker image #705
• Add more context to error messages #704
• test for old entities #702
• requirements in setup.py and requirements.txt #693
• Invalid entity (json file) can crash DLite #691
• Update the storages readme with all available plugins in native dlite #690
• Copy image storage plugin from TEM example to default plugins #685

Merged pull requests:

• Fix issues when compiling without Python #761 (jesper-friis)
• Updated error documentation #760 (jesper-friis)
• Avoid duplication of error messages #758 (jesper-friis)
• Improve compiling on Ubuntu #753 (jesper-friis)
• Print DLite errors in color by default #748 (jesper-friis)
• Added high-quality random number generators #745 (jesper-friis)
• Try to test for Python 3.12 on Windows #742 (jesper-friis)
• Added support for Python 3.12 via manylinux_x_y #739 (jesper-friis)
• Apply last changes from PR #667 #736 (jesper-friis)
• Updated README file for python storage plugins #733 (jesper-friis)
• Added image plugin #732 (jesper-friis)
• Added tests for both new and old instance formats #730 (jesper-friis)
• Added dockerfile for building with Ubuntu and minimal requirements #729 (jesper-friis)
• Fix "make uninstall" #728 (jesper-friis)
• Make json serialisation of collections more readable #726 (jesper-friis)
• Applied general fixes from PR 667 #720 (jesper-friis)
• Improved error codes #719 (jesper-friis)
• Cleaned up checking whether we are in an atexit handler #718 (jesper-friis)
• Added refcounting to storages #716 (jesper-friis)
• Updated setting default CMAKE_INSTALL_PREFIX such that it is only set once #715 (jesper-friis)
• Avoid adding new states to session while freeing all states. #713 (jesper-friis)
• Bump SINTEF/ci-cd from 2.5.3 to 2.6.0 #709 (dependabot[bot])
• Created a human readable error message for missing units. #708 (jesper-friis)
• Update nbclient requirement from <0.9,>=0.2 to >=0.2,<0.10 #707 (dependabot[bot])
• Fix typo in CMakeLists.txt when installing dlite-validate #703 (jesper-friis)
• Update sphinxcontrib-plantuml requirement from ~=0.26 to ~=0.27 #701 (dependabot[bot])
• Do not free the librdf world if called from atexit handler. #700 (jesper-friis)
• Colourful errors #699 (jesper-friis)
• Changed assertment for invalid json to error #698 (jesper-friis)
• Updated setup.py to read requirements from requirements.txt #697 (jesper-friis)
• Automatic detect virtualenv #696 (jesper-friis)
• Updated gitignore files #695 (jesper-friis)
• Added uninstall cmake target #694 (jesper-friis)
• Bump SINTEF/ci-cd from 2.5.2 to 2.5.3 #679 (dependabot[bot])
• Patching virtualenv activate.sh for multiple Python versions #664 (jesper-friis)
• Bump psycopg2-binary from 2.9.8 to 2.9.9 #663 (dependabot[bot])
• Bump SINTEF/ci-cd from 2.5.1 to 2.5.2 #662 ([de...

v0.4.5

What's Changed

• Removed dependency on oldest-supported-numpy by @jesper-friis in #692

Full Changelog: v0.4.4...v0.4.5

Changelog

v0.4.5 (2023-11-03)

Full Changelog

Merged pull requests:

• Removed dependency on oldest-supported-numpy #692 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.4.4

What's Changed

• Make dlite.Instance.copy() return the correct type by @jesper-friis in #682
• Added option single to Instance.asdict() allowing to saving in multi-entity format by @jesper-friis in #653
• Minor documentation clarifications by @jesper-friis in #675
• Fix inferring dimensionality of ref-type array properties by @jesper-friis in #677
• Build dlite docker containers for python 3.12 by @jesper-friis in #681
• Avoid running TEM demo as a test if dependencies are not fulfilled by @jesper-friis in #684
• Added test utilities by @jesper-friis in #687
• Fixed segfault caused by misspelled shape by @jesper-friis in #688

Full Changelog: v0.4.3...v0.4.4

Changelog

v0.4.4 (2023-11-01)

Full Changelog

Closed issues:

• Misspelling of shape in the datamodel may cause DLite to crash #686
• Add tests for utility function get_referred_instances() #673
• saving instance asdict cannot be read afterwards #651

Merged pull requests:

• Fixed segfault caused by misspelled shape #688 (jesper-friis)
• Added test utilities #687 (jesper-friis)
• Avoid running TEM demo as a test if dependencies are not fulfilled #684 (jesper-friis)
• Make dlite.Instance.copy() return the correct type #682 (jesper-friis)
• Build dlite docker containers for python 3.12 #681 (jesper-friis)
• Fix inferring dimensionality of ref-type array properties #677 (jesper-friis)
• Minor documentation clearifications #675 (jesper-friis)
• Added option single to Instance.asdict() allowing to saving in multi-entity format #653 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.4.3

What's Changed

• Added utility function get_referred_instances() by @jesper-friis in #672
• Fixed issue with creating metadata by @jesper-friis in #640
• Improved handling of special cases by @jesper-friis in #671
• Cleaned up mappings by @jesper-friis in #639
• Ensure that only metadata is callable by @jesper-friis in #676
• Added extra requirements for property mappings by @jesper-friis in #648
• Catch missed errors during instance initiation by @jesper-friis in #665
• Updated requirements in TEM-demo such that it should work out of the box by @jesper-friis in #657
• Cleaned up mappings by @jesper-friis in #678

Full Changelog: v0.4.2...v0.4.3

Changelog

v0.4.3 (2023-10-28)

Full Changelog

Fixed bugs:

• All CI tests fail during building HTML documentation with Sphinx #666
• DLite without full not working #629

Closed issues:

• Add test for TEM example #655
• Support soft7 datamodels #264

Merged pull requests:

• Cleaned up mappings #678 (jesper-friis)
• Ensure that only metadata is callable #676 (jesper-friis)
• Added utility function get_referred_instances() #672 (jesper-friis)
• Improved handling of special cases #671 (jesper-friis)
• Catch missed errors during instance initiation #665 (jesper-friis)
• Updated requirements in TEM-demo such that it should work out of the box #657 (jesper-friis)
• Added extra requirements for property mappings #648 (jesper-friis)
• Fixed issue with creating metadata #640 (jesper-friis)
• Cleaned up mappings #639 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.4.2

What's Changed

• 666 sphinx failure by @jesper-friis in #670
• Removed psycopg2-binary from requirement_full.txt by @jesper-friis in #668

Full Changelog: v0.4.1...v0.4.2

Changelog

v0.4.2 (2023-10-12)

Full Changelog

Fixed bugs:

• Seg fault for v0.4 #660

Merged pull requests:

• 666 sphinx failure #670 (jesper-friis)
• Removed psycopg2-binary from requirement_full.txt #668 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.4.1

What's Changed

• Clean up CI workflows for auto-updating dependencies by @CasperWA in #616
• Don't use setup.py XXX by @CasperWA in #614
• Bump actions/setup-python from 3 to 4 by @dependabot in #551
• Made it easy to silence specific DLite error messages both in C and Python by @jesper-friis in #641
• Iterate over storage plugins by @jesper-friis in #643
• Support quoted relations in collection by @jesper-friis in #633
• Tem example by @jesper-friis in #612
• Added new test for issue #543 by @jesper-friis in #649

Full Changelog: v0.4.0...v0.4.1

Changelog

v0.4.1 (2023-09-29)

Full Changelog

Fixed bugs:

• DLite without full not working #629

Closed issues:

• Superfluous file in .github #615
• Fix failing dependabot PRs #604
• Replace running setup.py #558
• Update mappings in DLite to use tripper #499

Merged pull requests:

• Added new test for issue #543 #649 (jesper-friis)
• Iterate over storage plugins #643 (jesper-friis)
• Made it easy to silence specific DLite error messages both in C and Python #641 (jesper-friis)
• Support quoted relations in collection #633 (jesper-friis)
• Clean up CI workflows for auto-updating dependencies #616 (CasperWA)
• Don't use setup.py XXX #614 (CasperWA)
• Tem example #612 (jesper-friis)
• Bump actions/setup-python from 3 to 4 #551 (dependabot[bot])

* This Changelog was automatically generated by github_changelog_generator

v0.4.0

Major change in DLite v0.4.0

Minimal installation

Running pip install dlite-python now does a minimal installation with NumPy as the only dependency.

To retain the former behaviour of get all optional dependencies needed by the different plugins, install DLite with

pip install dlite-python[full]

Improved error

Errors at C-level now raises corrosponding subclasses of DLiteError.

It is not possible to see traceback from errors occuring within Python storage plugins by setting the DLITE_PYDEBUG environment variable.

Merged pull requests

• 580 error messages from python plugins by @jesper-friis in #585
• Fix segfault when calling Instance.to_bytes() for drivers not supporting memsave by @jesper-friis in #588
• Code cleanup by @jesper-friis in #591
• Fix gcc warning by @jesper-friis in #596
• Cleaned up docstrings in the YAML storage plugin by @jesper-friis in #590
• Updated formatting of entities by @jesper-friis in #586
• Added support for Pydantic 2.x by @jesper-friis in #592
• Added --package option to patch-activate.sh script by @jesper-friis in #598
• Test http plugin by @jesper-friis in #593
• Install cmake with pip by @jesper-friis in #608
• Fix iterate over storage plugin names by @jesper-friis in #607
• Run python files through black by @jesper-friis in #610
• Make figures show up correctly in README on PyPI by @jesper-friis in #611
• Better error messages from within plugins by @jesper-friis in #613
• Reduce requirements by @jesper-friis in #594

Full Changelog: v0.3.22...v0.4.0

Changelog

v0.4.0 (2023-08-24)

Full Changelog

Fixed bugs:

• find_package(dlite) fails with CMake 3.26 #518
• Fix bugs introduced during documentation #468

Closed issues:

• Remove test_python_bindings #605
• Install Python package under lib64/ on systems supporting that #597
• Instance.to_bytes() segfaults if driver is not supported #587
• Support for pydantic 2.0 #574
• storages/python/python-storage-plugins/http.py needs requests #569
• Clean up requirements #517
• Shorten build time for musl linux #362

Merged pull requests:

• Better error messages from within plugins #613 (jesper-friis)
• Make figures show up correctly in README on PyPI #611 (jesper-friis)
• Run python files through black #610 (jesper-friis)
• Install cmake with pip #608 (jesper-friis)
• Fix iterate over storage plugin names #607 (jesper-friis)
• Added --package option to patch-activate.sh script #598 (jesper-friis)
• Fix gcc warning #596 (jesper-friis)
• Reduce requirements #594 (jesper-friis)
• Test http plugin #593 (jesper-friis)
• Added support for Pydantic 2.x #592 (jesper-friis)
• Code cleanup #591 (jesper-friis)
• Cleaned up docstrings in the YAML storage plugin #590 (jesper-friis)
• Python errors #589 (jesper-friis)
• Fix segfault when calling Instance.to_bytes() for drivers not supporting memsave #588 (jesper-friis)
• Updated formatting of entities #586 (jesper-friis)
• 580 error messages from python plugins #585 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator

v0.3.22

What's Changed

• Avoid calling a plugin from a plugin by @jesper-friis in #578
• Added "str" as an alias for "string" by @jesper-friis in #576
• Cleanup plugins by @jesper-friis in #583
• Updated README file in storage plugin example. by @jesper-friis in #577
• Example of how to serialise data models to RDF by @jesper-friis in #581
• Improved error reporting from Python by @jesper-friis in #584

Full Changelog: v0.3.21...v0.3.22

Changelog

v0.3.22 (2023-07-14)

Full Changelog

Implemented enhancements:

• Publish new documentation on GH Pages #369
• Add support for BSON serialisation directly in C #332

Fixed bugs:

• save entity to json, uuid not included #278

Closed issues:

• Error messages from Python plugins #580
• Add "str" as alias for "string" in datamodel types #571
• Update README in storage plugin example #570
• [Docs part] 1. Getting started #460
• [Docs part] 1.1.2. Features #457
• [Docs part] 1.2. Installation instructions #456
• [Docs part] 1.2.1. Setup instructions #455
• [Docs part] 1.2.2. Build instructions #454
• [Docs part] 1.3. Tutorial #453
• [Docs part] 2. User guide #452
• [Docs part] 2.2. Data types #450
• [Docs part] 2.3. Mappings #449
• [Docs part] 2.4. Collections #448
• [Docs part] 2.5. Bindings #447
• [Docs part] 2.6. Transactions #446
• [Docs part] 2.8. Environment variables #444
• [Docs part] 2.9. Code generation #443
• [Docs part] 3. API Reference #442
• [Docs part] 4. Contributor's Guide #441
• [Docs part] 4.1. Writing storage plugins #440
• [Docs part] 4.2. Writing mapping plugins #439
• [Docs part] 4.3. Documentation guideline #438
• [Docs part] 4.4. Testing examples in the documentation #437
• [Docs part] 4.5. Tips and tricks #436
• [Docs part] 5. Acknowledgement #435
• Expand on documentation contribution guidelines #432
• Resolve cross-references #417
• Duplicate object descriptions #416
• Generate sphinx rst-files and folders from index.xml #405
• Document the mappings example #403
• Document property mappings #399
• Update installation page #394
• Add page about type system #393
• Document instance mappings #392
• Tutorial #391
• Review existing examples #388
• Clean up README file #387
• Document how to install within a python environment #338
• Test property mappings #301
• Building via CMake using the Ninja Generator fails with multiple rules for dlite.py #144
• Make plugin for Stardog #136

Merged pull requests:

• Improved error reporting from Python #584 (jesper-friis)
• Cleanup plugins #583 (jesper-friis)
• Example of how to serialise data models to RDF #581 (jesper-friis)
• Updated PR template #579 (jesper-friis)
• Avoid calling a plugin from a plugin #578 (jesper-friis)
• Updated README file in storage plugin example. #577 (jesper-friis)
• Added "str" as an alias for "string" #576 (jesper-friis)

* This Changelog was automatically generated by github_changelog_generator