convert still reports sample table-level references even if a filtered libraries table given to --libraries

[jfy133]

Inspecting outut of this command:

AMDirT convert --curl --eager --bibliography --libraries germany_dentalcalculus_libraries_pe.tsv germany_dentalcalculus.tsv ancientmetagenome-hostassociated

Inspecting the eager/curl output it only has the PE data I filtered the libraries table to, but the BIB file still includes Warinner2014 that are single-end data present in the supplied samples sheet but was removed from the librareies table

convert-bib-issue.zip