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DESCRIPTION
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Package: scTarNet
Version: 0.01.00
Date: 2018-06-2
Title: Single-cell Targetted Network Inference
Author: Tallulah Andrews <[email protected]>
Maintainer: Tallulah Andrews <[email protected]>
Depends: R (>= 3.3.0)
Imports: energy, igraph, plyr, dplyr, parallel, doParallel, methods, foreach
Suggests: knitr
VignetteBuilder: knitr
biocViews: RNASeq, Sequencing, Transcriptomics, GeneExpression, Software, GraphAndNetwork
Collate: Functions.R Combine_Edges.R Plotting_Functions.R Sample_Genes.R
LazyData: true
Description: This package uses partial correlations to identify interactions between a set of user-provided transcription factors. Uses distance- and spearman- correlations to deal with non-gaussian single-cell RNASeq data.
URL: https://github.com/tallulandrews/scTarNet
BugReports: https://github.com/tallulandrews/scTarNet/issues
License: GPL (>=2)