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mode 100644 index 00000000..2393dcf3 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,107 @@ +[tool.poetry] +name = "ai-scientist" +version = "0.1.0" +description = "AI Scientist - Automated Scientific Research" +authors = ["AI Scientist Team"] +readme = "README.md" +packages = [{include = "ai_scientist"}] + +[tool.poetry.dependencies] +python = "^3.11" +# LLM APIs +anthropic = "*" +backoff = "*" +openai = "*" +# Viz +matplotlib = "*" +pypdf = "*" +pymupdf4llm = "*" +seaborn = "*" +# Common Requirements +numpy = "*" +transformers = "*" +datasets = "*" +tiktoken = "*" +wandb = "*" +tqdm = "*" +rich = "*" +humanize = "*" +dataclasses-json = "*" +funcy = "*" +black = "*" +genson = "*" +shutup = "*" +python-igraph = "*" +coolname = "*" +jsonschema = "*" +omegaconf = "*" +botocore = "*" +boto3 = "*" + +[tool.poetry.group.dev.dependencies] +pytest = "^8.0.0" +pytest-cov = "^6.0.0" +pytest-mock = "^3.14.0" + +[tool.poetry.scripts] +test = "pytest:main" +tests = "pytest:main" + +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = ["test_*.py", "*_test.py"] +python_classes = ["Test*"] +python_functions = ["test_*"] +addopts = [ + "-v", + "--strict-markers", + "--strict-config", + "--cov=ai_scientist", + "--cov-report=html", + "--cov-report=xml", + "--cov-report=term-missing", +] +markers = [ + "unit: Unit tests that test individual components in isolation", + "integration: Integration tests that test multiple components together", + "slow: Tests that take a long time to run", +] + +[tool.coverage.run] +source = ["ai_scientist"] +omit = [ + "*/tests/*", + "*/test_*.py", + "*/__pycache__/*", + "*/venv/*", + "*/env/*", + "*/.venv/*", + "*/setup.py", +] + +[tool.coverage.report] +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:", + "@abstractmethod", +] +precision = 2 +show_missing = true +skip_covered = false +# Target 80% coverage once tests are written +# Uncomment the line below to enforce coverage threshold: +# fail_under = 80 + +[tool.coverage.html] +directory = "htmlcov" + +[tool.coverage.xml] +output = "coverage.xml" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 00000000..fc057dda --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1 @@ +"""Test suite for AI Scientist project.""" diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 00000000..dc2fcd18 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,152 @@ +"""Shared pytest fixtures for AI Scientist tests.""" + +import os +import tempfile +from pathlib import Path +from typing import Generator + +import pytest + + +@pytest.fixture +def temp_dir() -> Generator[Path, None, None]: + """Create a temporary directory for test files. + + Yields: + Path: Path to the temporary directory + + Example: + def test_file_creation(temp_dir): + test_file = temp_dir / "test.txt" + test_file.write_text("content") + assert test_file.exists() + """ + with tempfile.TemporaryDirectory() as tmp_dir: + yield Path(tmp_dir) + + +@pytest.fixture +def temp_file(temp_dir: Path) -> Generator[Path, None, None]: + """Create a temporary file for testing. + + Args: + temp_dir: Temporary directory fixture + + Yields: + Path: Path to the temporary file + + Example: + def test_file_reading(temp_file): + temp_file.write_text("test content") + assert temp_file.read_text() == "test content" + """ + test_file = temp_dir / "test_file.txt" + test_file.touch() + yield test_file + + +@pytest.fixture +def mock_config() -> dict: + """Provide a mock configuration dictionary for testing. + + Returns: + dict: Mock configuration with common test settings + + Example: + def test_config_loading(mock_config): + assert "api_key" in mock_config + assert mock_config["timeout"] == 30 + """ + return { + "api_key": "test_api_key_123", + "timeout": 30, + "max_retries": 3, + "debug": True, + } + + +@pytest.fixture +def sample_data_dir(temp_dir: Path) -> Path: + """Create a sample data directory with test files. + + Args: + temp_dir: Temporary directory fixture + + Returns: + Path: Path to the sample data directory + + Example: + def test_data_loading(sample_data_dir): + files = list(sample_data_dir.glob("*.txt")) + assert len(files) > 0 + """ + data_dir = temp_dir / "data" + data_dir.mkdir(parents=True, exist_ok=True) + + # Create some sample files + (data_dir / "sample1.txt").write_text("Sample data 1") + (data_dir / "sample2.txt").write_text("Sample data 2") + + return data_dir + + +@pytest.fixture +def mock_env_vars(monkeypatch) -> dict: + """Set up mock environment variables for testing. + + Args: + monkeypatch: Pytest's monkeypatch fixture + + Returns: + dict: Dictionary of set environment variables + + Example: + def test_env_usage(mock_env_vars): + assert os.getenv("TEST_API_KEY") == "test_key" + """ + env_vars = { + "TEST_API_KEY": "test_key", + "TEST_DEBUG": "true", + "TEST_ENVIRONMENT": "testing", + } + + for key, value in env_vars.items(): + monkeypatch.setenv(key, value) + + return env_vars + + +@pytest.fixture +def capture_logs(caplog): + """Capture log messages during tests. + + Args: + caplog: Pytest's caplog fixture + + Yields: + LogCaptureFixture: The caplog fixture for log assertions + + Example: + def test_logging(capture_logs): + logger.info("Test message") + assert "Test message" in capture_logs.text + """ + yield caplog + + +@pytest.fixture(autouse=True) +def reset_environment(): + """Reset environment state before each test. + + This fixture runs automatically before each test to ensure + a clean state. Add any cleanup logic here. + + Yields: + None: Yields control to the test, then performs cleanup + """ + # Setup: Add any pre-test setup here + + yield + + # Teardown: Add any post-test cleanup here + pass diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 00000000..a69d5d9f --- /dev/null +++ b/tests/integration/__init__.py @@ -0,0 +1 @@ +"""Integration tests for AI Scientist project.""" diff --git a/tests/test_infrastructure.py b/tests/test_infrastructure.py new file mode 100644 index 00000000..caa46db3 --- /dev/null +++ b/tests/test_infrastructure.py @@ -0,0 +1,133 @@ +"""Validation tests to verify testing infrastructure is set up correctly.""" + +import sys +from pathlib import Path + +import pytest + + +class TestInfrastructure: + """Tests to validate the testing infrastructure setup.""" + + def test_python_version(self): + """Verify Python version meets requirements.""" + assert sys.version_info >= (3, 11), "Python 3.11 or higher is required" + + def test_pytest_working(self): + """Verify pytest is working correctly.""" + assert True, "Basic pytest assertion works" + + @pytest.mark.unit + def test_unit_marker(self): + """Verify unit test marker is configured.""" + # This test validates that the 'unit' marker is properly configured + assert True + + @pytest.mark.integration + def test_integration_marker(self): + """Verify integration test marker is configured.""" + # This test validates that the 'integration' marker is properly configured + assert True + + @pytest.mark.slow + def test_slow_marker(self): + """Verify slow test marker is configured.""" + # This test validates that the 'slow' marker is properly configured + assert True + + def test_project_structure(self): + """Verify the project directory structure exists.""" + project_root = Path(__file__).parent.parent + ai_scientist_dir = project_root / "ai_scientist" + + assert project_root.exists(), "Project root should exist" + assert ai_scientist_dir.exists(), "ai_scientist package should exist" + + def test_test_directories_exist(self): + """Verify test directories are properly created.""" + tests_dir = Path(__file__).parent + unit_dir = tests_dir / "unit" + integration_dir = tests_dir / "integration" + + assert tests_dir.exists(), "tests directory should exist" + assert unit_dir.exists(), "tests/unit directory should exist" + assert integration_dir.exists(), "tests/integration directory should exist" + + def test_conftest_exists(self): + """Verify conftest.py exists for shared fixtures.""" + conftest_path = Path(__file__).parent / "conftest.py" + assert conftest_path.exists(), "conftest.py should exist" + + +class TestFixtures: + """Tests to validate shared fixtures work correctly.""" + + def test_temp_dir_fixture(self, temp_dir): + """Verify temp_dir fixture creates a usable directory.""" + assert temp_dir.exists(), "Temporary directory should exist" + assert temp_dir.is_dir(), "temp_dir should be a directory" + + # Test writing to temp directory + test_file = temp_dir / "test.txt" + test_file.write_text("test content") + assert test_file.exists(), "Should be able to create files in temp_dir" + assert test_file.read_text() == "test content" + + def test_temp_file_fixture(self, temp_file): + """Verify temp_file fixture creates a usable file.""" + assert temp_file.exists(), "Temporary file should exist" + assert temp_file.is_file(), "temp_file should be a file" + + # Test writing and reading + temp_file.write_text("test data") + assert temp_file.read_text() == "test data" + + def test_mock_config_fixture(self, mock_config): + """Verify mock_config fixture provides expected structure.""" + assert isinstance(mock_config, dict), "mock_config should be a dictionary" + assert "api_key" in mock_config, "mock_config should contain api_key" + assert "timeout" in mock_config, "mock_config should contain timeout" + assert "max_retries" in mock_config, "mock_config should contain max_retries" + assert mock_config["debug"] is True, "mock_config debug should be True" + + def test_sample_data_dir_fixture(self, sample_data_dir): + """Verify sample_data_dir fixture creates test data.""" + assert sample_data_dir.exists(), "Sample data directory should exist" + assert sample_data_dir.is_dir(), "sample_data_dir should be a directory" + + files = list(sample_data_dir.glob("*.txt")) + assert len(files) > 0, "sample_data_dir should contain test files" + + def test_mock_env_vars_fixture(self, mock_env_vars): + """Verify mock_env_vars fixture sets environment variables.""" + import os + + assert isinstance(mock_env_vars, dict), "mock_env_vars should be a dictionary" + assert os.getenv("TEST_API_KEY") == "test_key", "Environment variable should be set" + assert os.getenv("TEST_DEBUG") == "true" + assert os.getenv("TEST_ENVIRONMENT") == "testing" + + +class TestMocking: + """Tests to validate pytest-mock is working.""" + + def test_mocker_fixture_available(self, mocker): + """Verify pytest-mock's mocker fixture is available.""" + # Create a simple mock + mock_func = mocker.Mock(return_value=42) + result = mock_func() + + assert result == 42, "Mock should return the configured value" + mock_func.assert_called_once() + + def test_patch_functionality(self, mocker): + """Verify mocker.patch works correctly.""" + # Patch a built-in function + mock_open = mocker.patch("builtins.open", mocker.mock_open(read_data="mocked data")) + + # Use the patched function + with open("dummy_file.txt") as f: + content = f.read() + + assert content == "mocked data", "Patched function should return mocked data" + mock_open.assert_called_once_with("dummy_file.txt") diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 00000000..fe53763b --- /dev/null +++ b/tests/unit/__init__.py @@ -0,0 +1 @@ +"""Unit tests for AI Scientist project."""