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Error during generation of SQL database #2

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JB91451 opened this issue Jan 30, 2020 · 2 comments
Open

Error during generation of SQL database #2

JB91451 opened this issue Jan 30, 2020 · 2 comments

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@JB91451
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JB91451 commented Jan 30, 2020 •
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Dear Sebastian,

I just started to use AvG. I have a rather large DIA dataset ("only" six samples, but ~2500 proteins). When I try to generate the SQL database (I tested both options, directly from Skyline project and from .csv file) the R script allways stops with the an error saying that it can not allocate a vector bigger than 1.5 Gb. I guess this happens when the number of proteins/ transitions is to large? Is there any chance to get this step to run?

Best regards,
Juergen
@jamesbroadbent
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Same here. @JB91451 - any luck sorting a work around for this?

Kind regards,

James

@JB91451
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JB91451 commented Jun 30, 2020

Dear James,

No unfortunately it never did never work for me.

Best,
Juergen

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@jamesbroadbent @JB91451