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_pkgdown.yml
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/
_pkgdown.yml
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url: https://madsalbertsen.github.io/ampvis2
home:
links:
- text: Latest stable release
href: https://github.com/MadsAlbertsen/ampvis2
template:
params:
bootswatch: yeti
docsearch:
api_key: b0ba3a3eb751685982ccf010113f380a
index_name: ampvis2
ganalytics: UA-93913019-2
reference:
- title: Data and filtering
desc: Functions for loading, exporting and subsetting the data.
contents:
- amp_load
- amp_subset_samples
- amp_subset_taxa
- amp_mergereplicates
- amp_import_biom
- amp_import_usearch
- amp_export_fasta
- amp_export_otutable
- amp_export_long
- title: Summary functions
contents:
- amp_alphadiv
- title: Plotting functions
desc: Functions for visualising amplicon data.
contents:
- amp_rarecurve
- amp_octave
- amp_boxplot
- amp_heatmap
- amp_ordinate
- amp_timeseries
- amp_venn
- amp_core
- amp_frequency
- amp_otu_network
- amp_rankabundance
- title: Data sets
contents:
- has_keyword("data")
navbar:
title: "ampvis2"
left:
- text: "Home"
href: index.html
- text: "Get Started"
href: articles/ampvis2.html
- text: "Functions"
href: reference/index.html
- text: "FAQ"
href: articles/faq.html
right:
- icon: fa-github fa-lg
href: https://github.com/MadsAlbertsen/ampvis2