Dockerfile

# Build our documentation and push it to github 

FROM ubuntu:14.04 
MAINTAINER Denis Yuen <denis.yuen@oicr.on.ca>

WORKDIR /root

ADD config /root/.ssh/config
ADD private_key.pem /root/.ssh/id_rsa
RUN sudo apt-get update ; \
    sudo apt-get -y install ssh software-properties-common ;
RUN sudo chown -R root /root/.ssh ;\
    sudo chmod -R 600 /root/.ssh/* ;\
    eval "$(ssh-agent -s)" ;\
    ssh-add ~/.ssh/id_rsa ;\
    sudo apt-add-repository -y ppa:rael-gc/rvm ;\
    sudo apt-get update ; \
    sudo apt-get -y install rvm git ruby1.9.3 ruby-rdiscount ruby-nokogiri ;

# install java 8
RUN \
  echo oracle-java8-installer shared/accepted-oracle-license-v1-1 select true | debconf-set-selections && \
  add-apt-repository -y ppa:webupd8team/java && \
  apt-get update && \
  apt-get install -y oracle-java8-installer && \
  rm -rf /var/lib/apt/lists/* && \
  rm -rf /var/cache/oracle-jdk8-installer

# Define commonly used JAVA_HOME variable
ENV JAVA_HOME /usr/lib/jvm/java-8-oracle

# install Maven 3.3.9
ENV MAVEN_VERSION 3.3.9

RUN mkdir -p /usr/share/maven \
  && curl -fsSL http://apache.osuosl.org/maven/maven-3/$MAVEN_VERSION/binaries/apache-maven-$MAVEN_VERSION-bin.tar.gz \
    | tar -xzC /usr/share/maven --strip-components=1 \
  && ln -s /usr/share/maven/bin/mvn /usr/bin/mvn

ENV MAVEN_HOME /usr/share/maven

# enforce US locale, seems to better agree with gems
USER root
RUN     sudo locale-gen en_US.UTF-8 ;\
	sudo dpkg-reconfigure locales ;\
        echo "export LANGUAGE=en_US.UTF-8" >> /etc/bash.bashrc ;\
	echo "export LANG=en_US.UTF-8" >> /etc/bash.bashrc ;\
	echo "export LC_ALL=en_US.UTF-8" >> /etc/bash.bashrc ;\
	echo "export LC_CTYPE=en_US.UTF-8" >> /etc/bash.bashrc ;\
	echo 'LANG="en_US.UTF-8"' | sudo tee /etc/default/locale ;\
	echo 'LC_ALL="en_US.UTF-8"' | sudo tee -a /etc/default/locale ;\
	echo 'LC_CTYPE="en_US.UTF-8"' | sudo tee -a /etc/default/locale ;\
	echo 'LANG="en_US.UTF-8"' | sudo tee -a /etc/environment ;\
	echo 'LC_ALL="en_US.UTF-8"' | sudo tee -a /etc/environment ;\
	echo 'LC_CTYPE="en_US.UTF-8"' | sudo tee -a /etc/environment

RUN     export LANGUAGE=en_US.UTF-8;\
        export LANG=en_US.UTF-8 ;\
	export LC_ALL=en_US.UTF-8 ;\
	export LC_CTYPE=en_US.UTF-8 ;\
        sudo gem install kramdown adsf mime-types compass haml coderay rubypants builder rainpress yajl-ruby pygments.rb ;\
        sudo gem install nanoc -v 3.7.1 ;\
        sudo gem uninstall yajl-ruby --version 1.2.1

RUN git config --global user.name "Seqware jenkins" ;\
    git config --global user.email seqware-jenkins@oicr.on.ca 

ADD settings.xml  /root/.m2/settings.xml
RUN git clone -b develop https://github.com/SeqWare/seqware.git 
WORKDIR /root/seqware 
# current gem version seems to fix the incompatibility
RUN sudo gem install yajl-ruby