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Code breaks due to mismatch in the expected number of beads and the input number of beads. #5

@ShufflerBardOnTheEdge

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@ShufflerBardOnTheEdge

When detecting more beads in a residue than expected the code breaks when trying to write the final oriented pdb. This can be avoided entirely by ensuring that each residue within a chain has a different residue ID. A fix to this issue will be forthcoming soon.

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