All the scripts are used to build a database for epigenetic group at the University of Exeter.
Step 1: Prepare the resource csv files. Have a look at the slides.
- pheno file: column one must be the sample name; 'IndividualID'; 'Sample_ID'; 'PCW'; 'Sex';
- epic file: 'ProbeID', 'Name', 'CHR', 'CpG Island', 'Gene', 'Group';
- betas file
Step 2: git clone https://github.com/SiyiSEA/db_web_app.git
Step 3: Put all the resource files into the current dir Edit run.sh
Setp 4: sbatch run.sh