DESCRIPTION

Package: LDWeaver
Type: Package
Title: Genomewide Epistasis Analysis on Bacteria
Version: 1.5.1
Authors@R: person("Sudaraka", "Mallawaarachchi", email = "smallawaarachchi@gmail.com", role = c("aut", "cre"))
Maintainer: Sudaraka Mallawaarachchi <smallawaarachchi@gmail.com>
Description: Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
License: GPL (>=3) + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews: Software
Depends: R (>= 4.0.0),
Imports: 
         ape,
         Biostrings,
         chromoMap,
         data.table,
         dplyr,
         fitdistrplus,
         GenomicRanges,
         GenomeInfoDb,
         ggplot2,
         ggraph,
         grDevices,
         heatmap3,
         htmlwidgets,
         igraph,
         IRanges,
         Matrix,
         MatrixExtra,
         methods,
         parallel,
         plyr,
         RColorBrewer,
         Rcpp,
         RcppArmadillo,
         S4Vectors,
         stats,
         utils,
         VariantAnnotation
Suggests:
    phytools,
    ggtree,
    ggnewscale,
    spam,
    spam64,
    testthat (>= 3.0.0)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.3.2
URL: https://github.com/Sudaraka88/LDWeaver
BugReports: https://github.com/Sudaraka88/LDWeaver/issues
Biarch: TRUE
Config/testthat/edition: 3