Docker on Mac

[mauede33]

I finally could complete all the steps described in Dr Atkinson's video.
However, my Docker dashboard does not have all the images shown in the video
For instance, I do not have a Gadgetron.
In the Jupyter terminal, I see fewer items (base) sirf$ pwd
/devel
(base) sirf$ ls
CIL-Demos requirements-test.txt shared.txt SIRF-contrib SIRF-Exercises test.sh
(base) sirf$ ls -la
total 16
drwxr-xr-x 9 sirfuser dialout 288 Jul 3 14:56 .
drwxr-xr-x 1 root root 4096 Jul 3 14:55 ..
drwxr-xr-x 3 sirfuser dialout 96 Jul 2 09:47 .ccache
drwxr-xr-x 9 jovyan users 288 Jul 2 18:12 CIL-Demos
-rw-r--r-- 1 sirfuser dialout 14 Jul 2 09:47 requirements-test.txt
-rw-r--r-- 1 sirfuser dialout 261 Jul 2 09:47 shared.txt
lrwxr-xr-x 1 sirfuser dialout 48 Jul 3 14:56 SIRF-contrib -> /opt/SIRF-SuperBuild/INSTALL/python/sirf/contrib
drwxr-xr-x 16 jovyan users 512 Jul 2 18:10 SIRF-Exercises
-rwxr-xr-x 1 sirfuser dialout 787 Jul 2 09:47 test.sh
(base) sirf$

Is that OK?
I can see the 1st-week notebooks when I navigate the Jupyter terminal.
Shall I run the notebooks in the Jupyter terminal?
Thank you

[KrisThielemans]

This looks all fine. Now you have to use the Jupyter interface to open one of the notebooks (just like you would do in the VM or the cloud). There is little need for using the terminal (launched from Jupyter), except for downloading the data.

[DANAJK]

Although there is a Gadgetron docker on my Mac (I assume this is visible in the video), it is old and I don't think it is relevant to the SIRF course. My understanding is that the SIRF Docker container will contain everything and you do not need to download any other Dockers.

[DANAJK]

With regards to Docker daemons on a Mac: with Docker Desktop running, I think that is sufficient. You can tell if it is running by left-clicking on the Docker whale icon in the top bar. The first menu entry tells you its status.