From 73ad3feb29c5f76d862f241e69fcf6ce8ddf4e77 Mon Sep 17 00:00:00 2001
From: Xu Han <hxhxhx88@gmail.com>
Date: Wed, 28 Feb 2024 17:11:31 +0800
Subject: [PATCH] connected to sqlite3 in dev mode but can not bundle yet

---
 app/action/start.go                           |  11 +-
 app/frontend/craco.config.js                  |   4 +
 app/frontend/src/common/annotation.ts         |   2 +-
 app/frontend/src/common/mouse.ts              |   7 +
 app/frontend/src/common/util.ts               |   8 -
 app/frontend/src/common/yjs/convert.ts        |  11 +-
 app/frontend/src/common/yjs/docs/component.ts |   2 +-
 app/frontend/src/common/yjs/docs/entity.ts    |   2 +-
 app/frontend/src/common/yjs/docs/mask.ts      |   2 +-
 app/frontend/src/common/yjs/docs/polychain.ts |   2 +-
 app/frontend/src/common/yjs/docs/rectangle.ts |   2 +-
 .../src/component/panel/layer/mask/Hover.tsx  |   2 +-
 .../panel/layer/mask/Segment/FocusCanvas.tsx  |   2 +-
 .../layer/mask/Segment/PredictContainer.tsx   |   2 +-
 .../component/segmentation/BrushCanvas.tsx    |   2 +-
 app/frontend/tsconfig.json                    |  17 +-
 app/yjs-server/.prettierrc                    |   3 +
 app/yjs-server/package-lock.json              | 965 ++++++++++++++++--
 app/yjs-server/package.json                   |   1 +
 app/yjs-server/src/index.ts                   |  79 +-
 app/yjs-server/tsconfig.json                  |   8 +-
 app/yjs-server/webpack.config.ts              |   5 +-
 22 files changed, 971 insertions(+), 168 deletions(-)
 create mode 100644 app/frontend/src/common/mouse.ts
 create mode 100644 app/yjs-server/.prettierrc

diff --git a/app/action/start.go b/app/action/start.go
index 43c34cc..328e9ec 100644
--- a/app/action/start.go
+++ b/app/action/start.go
@@ -135,7 +135,7 @@ func createServer() (backend.Server, func(), error) {
 	var opts []backend.Option
 
 	// storage
-	db, err := sqlite3.New(filepath.Join(databaseDir(), "db.sqlite3"))
+	db, err := sqlite3.New(databasePath())
 	if err != nil {
 		return nil, nil, err
 	}
@@ -217,6 +217,10 @@ func databaseDir() string {
 	return filepath.Join(StorageOption.Workspace, "database")
 }
 
+func databasePath() string {
+	return filepath.Join(databaseDir(), "db.sqlite3")
+}
+
 func mustStartYJSServer() int {
 	// create a temporary file
 	bin, err := os.CreateTemp("", "nutsh-yjs-*")
@@ -232,15 +236,14 @@ func mustStartYJSServer() int {
 
 	// prepare arguments
 	internalPort := mustFindFreePort()
-	dir := filepath.Join(StorageOption.Workspace, "yjs")
 
 	// execute the binary in a new process
 	cmd := exec.Command(bin.Name())
 	cmd.Env = []string{
 		fmt.Sprintf("PORT=%d", internalPort),
-		fmt.Sprintf("DATA_DIR=%s", dir),
+		fmt.Sprintf("DATABASE_PATH=%s", databasePath()),
 	}
-	zap.L().Info("start yjs-server server", zap.Int("port", internalPort), zap.String("dir", dir))
+	zap.L().Info("start yjs-server server", zap.Int("port", internalPort))
 
 	cmd.Stderr = os.Stderr
 	cmd.Stdout = os.Stdout
diff --git a/app/frontend/craco.config.js b/app/frontend/craco.config.js
index c1f278b..9e79524 100644
--- a/app/frontend/craco.config.js
+++ b/app/frontend/craco.config.js
@@ -1,8 +1,12 @@
 // eslint-disable-next-line node/no-unpublished-require
 const CopyWebpackPlugin = require('copy-webpack-plugin');
+const path = require('path');
 
 module.exports = {
   webpack: {
+    alias: {
+      '@@frontend': path.resolve(__dirname, 'src/'),
+    },
     configure: config => {
       config.plugins.push(
         new CopyWebpackPlugin({
diff --git a/app/frontend/src/common/annotation.ts b/app/frontend/src/common/annotation.ts
index 8521b22..cc99372 100644
--- a/app/frontend/src/common/annotation.ts
+++ b/app/frontend/src/common/annotation.ts
@@ -1,4 +1,4 @@
-import {Annotation, Component, Entity, EntityId, SliceIndex, Vertex} from 'type/annotation';
+import type {Annotation, Component, Entity, EntityId, SliceIndex, Vertex} from '@@frontend/type/annotation';
 import {deepClone} from './util';
 
 export function addAnnotationComponent(
diff --git a/app/frontend/src/common/mouse.ts b/app/frontend/src/common/mouse.ts
new file mode 100644
index 0000000..ad3f531
--- /dev/null
+++ b/app/frontend/src/common/mouse.ts
@@ -0,0 +1,7 @@
+export function relativeMousePosition<T extends HTMLElement>(event: React.MouseEvent<T>, ele: T) {
+  const rect = ele.getBoundingClientRect();
+  return {
+    x: event.clientX - rect.left,
+    y: event.clientY - rect.top,
+  };
+}
diff --git a/app/frontend/src/common/util.ts b/app/frontend/src/common/util.ts
index be18cca..b37bf5a 100644
--- a/app/frontend/src/common/util.ts
+++ b/app/frontend/src/common/util.ts
@@ -7,11 +7,3 @@ export function deepClone<T>(obj: T): T {
 export function deepEqual<T>(a: T, b: T): boolean {
   return deepCompare(a, b);
 }
-
-export function relativeMousePosition<T extends HTMLElement>(event: React.MouseEvent<T>, ele: T) {
-  const rect = ele.getBoundingClientRect();
-  return {
-    x: event.clientX - rect.left,
-    y: event.clientY - rect.top,
-  };
-}
diff --git a/app/frontend/src/common/yjs/convert.ts b/app/frontend/src/common/yjs/convert.ts
index 6351b97..78eb587 100644
--- a/app/frontend/src/common/yjs/convert.ts
+++ b/app/frontend/src/common/yjs/convert.ts
@@ -1,5 +1,5 @@
-import {emptyAnnotation} from 'state/annotate/render';
-import {
+import * as Y from 'yjs';
+import type {
   Annotation,
   Component,
   ComponentId,
@@ -7,17 +7,16 @@ import {
   PolychainComponent,
   RectangleComponent,
   SliceIndex,
-} from 'type/annotation';
-import * as Y from 'yjs';
+} from '@@frontend/type/annotation';
+import {addAnnotationComponent, setEntityCategory} from '@@frontend/common/annotation';
 import {yjsComponentMap, Component as YjsComponent} from './docs/component';
 import {yjsRectangleAnchorsMap} from './docs/rectangle';
 import {yjsPolychainVerticesMap} from './docs/polychain';
 import {yjsMaskMap} from './docs/mask';
 import {encodeEntityCategoryMapKey, decodeEntityCategoryMapKey, yjsEntityCategoriesMap} from './docs/entity';
-import {addAnnotationComponent, setEntityCategory} from 'common/annotation';
 
 export function readAnnotationFromYjs(doc: Y.Doc): Annotation {
-  const anno = emptyAnnotation();
+  const anno: Annotation = {entities: {}};
 
   // components
   const comps = yjsComponentMap(doc);
diff --git a/app/frontend/src/common/yjs/docs/component.ts b/app/frontend/src/common/yjs/docs/component.ts
index 64a9f01..cf62261 100644
--- a/app/frontend/src/common/yjs/docs/component.ts
+++ b/app/frontend/src/common/yjs/docs/component.ts
@@ -1,4 +1,4 @@
-import {EntityId, SliceIndex} from 'type/annotation';
+import type {EntityId, SliceIndex} from '@@frontend/type/annotation';
 import * as Y from 'yjs';
 
 export type ComponentBase = {
diff --git a/app/frontend/src/common/yjs/docs/entity.ts b/app/frontend/src/common/yjs/docs/entity.ts
index 4f2f721..95df377 100644
--- a/app/frontend/src/common/yjs/docs/entity.ts
+++ b/app/frontend/src/common/yjs/docs/entity.ts
@@ -1,4 +1,4 @@
-import {EntityId, SliceIndex} from 'type/annotation';
+import type {EntityId, SliceIndex} from '@@frontend/type/annotation';
 import * as Y from 'yjs';
 
 export type CategoryList = string[];
diff --git a/app/frontend/src/common/yjs/docs/mask.ts b/app/frontend/src/common/yjs/docs/mask.ts
index 731658c..c49fbd3 100644
--- a/app/frontend/src/common/yjs/docs/mask.ts
+++ b/app/frontend/src/common/yjs/docs/mask.ts
@@ -1,5 +1,5 @@
 import * as Y from 'yjs';
-import {MaskComponent} from 'type/annotation';
+import type {MaskComponent} from '@@frontend/type/annotation';
 
 export type Mask = MaskComponent;
 
diff --git a/app/frontend/src/common/yjs/docs/polychain.ts b/app/frontend/src/common/yjs/docs/polychain.ts
index d6c68e8..87c1063 100644
--- a/app/frontend/src/common/yjs/docs/polychain.ts
+++ b/app/frontend/src/common/yjs/docs/polychain.ts
@@ -1,5 +1,5 @@
 import * as Y from 'yjs';
-import {Vertex} from 'type/annotation';
+import type {Vertex} from '@@frontend/type/annotation';
 
 export type PolychainVertices = Y.Array<Vertex>;
 
diff --git a/app/frontend/src/common/yjs/docs/rectangle.ts b/app/frontend/src/common/yjs/docs/rectangle.ts
index 16db092..95155c6 100644
--- a/app/frontend/src/common/yjs/docs/rectangle.ts
+++ b/app/frontend/src/common/yjs/docs/rectangle.ts
@@ -1,5 +1,5 @@
 import * as Y from 'yjs';
-import {RectangleComponent} from 'type/annotation';
+import type {RectangleComponent} from '@@frontend/type/annotation';
 
 export type RectangleAnchors = Pick<RectangleComponent, 'topLeft' | 'bottomRight'>;
 
diff --git a/app/frontend/src/component/panel/layer/mask/Hover.tsx b/app/frontend/src/component/panel/layer/mask/Hover.tsx
index 3cf5915..46f2e0f 100644
--- a/app/frontend/src/component/panel/layer/mask/Hover.tsx
+++ b/app/frontend/src/component/panel/layer/mask/Hover.tsx
@@ -3,7 +3,7 @@ import {ComponentProximity} from 'state/annotate/render/mouse';
 import {useStore as useBrushCanvasStore} from 'component/segmentation/BrushCanvas';
 import {useStore as useRenderStore} from 'state/annotate/render';
 import {useStore as useUIStore} from 'state/annotate/ui';
-import {relativeMousePosition} from 'common/util';
+import {relativeMousePosition} from 'common/mouse';
 import {coordinatesCanvasToImage} from 'common/geometry';
 
 type Props = HTMLAttributes<HTMLDivElement> & {
diff --git a/app/frontend/src/component/panel/layer/mask/Segment/FocusCanvas.tsx b/app/frontend/src/component/panel/layer/mask/Segment/FocusCanvas.tsx
index 33b0cfc..df6a99d 100644
--- a/app/frontend/src/component/panel/layer/mask/Segment/FocusCanvas.tsx
+++ b/app/frontend/src/component/panel/layer/mask/Segment/FocusCanvas.tsx
@@ -4,7 +4,7 @@ import {Spin, Tag} from 'antd';
 import intl from 'react-intl-universal';
 import {Tensor} from 'onnxruntime-web';
 import shallow from 'zustand/shallow';
-import {relativeMousePosition} from 'common/util';
+import {relativeMousePosition} from 'common/mouse';
 import {coordinatesCanvasToImage, coordinatesImageToCanvas, limitGrid} from 'common/geometry';
 import {drawRect} from 'common/draw';
 import {SurroundStyle} from 'common/constant';
diff --git a/app/frontend/src/component/panel/layer/mask/Segment/PredictContainer.tsx b/app/frontend/src/component/panel/layer/mask/Segment/PredictContainer.tsx
index 9d84e6b..943c5fe 100644
--- a/app/frontend/src/component/panel/layer/mask/Segment/PredictContainer.tsx
+++ b/app/frontend/src/component/panel/layer/mask/Segment/PredictContainer.tsx
@@ -6,7 +6,7 @@ import {throttle} from 'lodash';
 import {Tensor} from 'onnxruntime-web';
 
 import {FocusOpacity} from 'common/constant';
-import {relativeMousePosition} from 'common/util';
+import {relativeMousePosition} from 'common/mouse';
 import {coordinatesCanvasToImage, coordinatesImageToCanvas, distance} from 'common/geometry';
 import {SizedContainer} from 'component/SizedContainer';
 import {Coordinates} from 'type/annotation';
diff --git a/app/frontend/src/component/segmentation/BrushCanvas.tsx b/app/frontend/src/component/segmentation/BrushCanvas.tsx
index a1c56af..410a366 100644
--- a/app/frontend/src/component/segmentation/BrushCanvas.tsx
+++ b/app/frontend/src/component/segmentation/BrushCanvas.tsx
@@ -6,7 +6,7 @@ import {coordinatesCanvasToImage, coordinatesImageToCanvas, distance} from 'comm
 import {FocusOpacity} from 'common/constant';
 import {convertRGBA2Hex} from 'common/color';
 import {Coordinates} from 'type/annotation';
-import {relativeMousePosition} from 'common/util';
+import {relativeMousePosition} from 'common/mouse';
 import {updateImageRendering, useCanvasContext} from '../panel/layer/mask/common';
 import {ViewportTransform} from 'state/annotate/render/viewport';
 import {Alert, Button, Popover, Slider, Space, Tag, Tooltip, Typography, theme} from 'antd';
diff --git a/app/frontend/tsconfig.json b/app/frontend/tsconfig.json
index 295c21e..fd2e0c3 100644
--- a/app/frontend/tsconfig.json
+++ b/app/frontend/tsconfig.json
@@ -2,11 +2,7 @@
   "extends": "./node_modules/gts/tsconfig-google.json",
   "compilerOptions": {
     "target": "es2015",
-    "lib": [
-      "dom",
-      "dom.iterable",
-      "esnext"
-    ],
+    "lib": ["dom", "dom.iterable", "esnext"],
     "allowJs": true,
     "skipLibCheck": true,
     "esModuleInterop": true,
@@ -19,13 +15,14 @@
     "resolveJsonModule": true,
     "isolatedModules": true,
     "noEmit": true,
-    "jsx": "react-jsx",    
+    "jsx": "react-jsx",
     "jsxImportSource": "@emotion/react",
 
     // To enable importing by absolute path
-    "baseUrl": "src"
+    "baseUrl": "src",
+    "paths": {
+      "@@frontend/*": ["*"]
+    }
   },
-  "include": [
-    "src"
-  ]
+  "include": ["src"]
 }
diff --git a/app/yjs-server/.prettierrc b/app/yjs-server/.prettierrc
new file mode 100644
index 0000000..963354f
--- /dev/null
+++ b/app/yjs-server/.prettierrc
@@ -0,0 +1,3 @@
+{
+  "printWidth": 120
+}
diff --git a/app/yjs-server/package-lock.json b/app/yjs-server/package-lock.json
index 1e70e1f..e6ace8d 100644
--- a/app/yjs-server/package-lock.json
+++ b/app/yjs-server/package-lock.json
@@ -10,6 +10,7 @@
       "dependencies": {
         "bufferutil": "^4.0.8",
         "nodemon": "^3.1.0",
+        "sqlite3": "^5.1.7",
         "utf-8-validate": "^6.0.3",
         "ws": "^8.16.0",
         "y-websocket": "^1.5.4",
@@ -521,6 +522,12 @@
         "node": "^12.22.0 || ^14.17.0 || >=16.0.0"
       }
     },
+    "node_modules/@gar/promisify": {
+      "version": "1.1.3",
+      "resolved": "https://registry.npmjs.org/@gar/promisify/-/promisify-1.1.3.tgz",
+      "integrity": "sha512-k2Ty1JcVojjJFwrg/ThKi2ujJ7XNLYaFGNB/bWT9wGR+oSMJHMa5w+CUq6p/pVrKeNNgA7pCqEcjSnHVoqJQFw==",
+      "optional": true
+    },
     "node_modules/@humanwhocodes/config-array": {
       "version": "0.11.14",
       "resolved": "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.11.14.tgz",
@@ -709,6 +716,63 @@
         "node": ">= 8"
       }
     },
+    "node_modules/@npmcli/fs": {
+      "version": "1.1.1",
+      "resolved": "https://registry.npmjs.org/@npmcli/fs/-/fs-1.1.1.tgz",
+      "integrity": "sha512-8KG5RD0GVP4ydEzRn/I4BNDuxDtqVbOdm8675T49OIG/NGhaK0pjPX7ZcDlvKYbA+ulvVK3ztfcF4uBdOxuJbQ==",
+      "optional": true,
+      "dependencies": {
+        "@gar/promisify": "^1.0.1",
+        "semver": "^7.3.5"
+      }
+    },
+    "node_modules/@npmcli/fs/node_modules/lru-cache": {
+      "version": "6.0.0",
+      "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-6.0.0.tgz",
+      "integrity": "sha512-Jo6dJ04CmSjuznwJSS3pUeWmd/H0ffTlkXXgwZi+eq1UCmqQwCh+eLsYOYCwY991i2Fah4h1BEMCx4qThGbsiA==",
+      "optional": true,
+      "dependencies": {
+        "yallist": "^4.0.0"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
+    "node_modules/@npmcli/fs/node_modules/semver": {
+      "version": "7.6.0",
+      "resolved": "https://registry.npmjs.org/semver/-/semver-7.6.0.tgz",
+      "integrity": "sha512-EnwXhrlwXMk9gKu5/flx5sv/an57AkRplG3hTK68W7FRDN+k+OWBj65M7719OkA82XLBxrcX0KSHj+X5COhOVg==",
+      "optional": true,
+      "dependencies": {
+        "lru-cache": "^6.0.0"
+      },
+      "bin": {
+        "semver": "bin/semver.js"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
+    "node_modules/@npmcli/fs/node_modules/yallist": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
+      "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+      "optional": true
+    },
+    "node_modules/@npmcli/move-file": {
+      "version": "1.1.2",
+      "resolved": "https://registry.npmjs.org/@npmcli/move-file/-/move-file-1.1.2.tgz",
+      "integrity": "sha512-1SUf/Cg2GzGDyaf15aR9St9TWlb+XvbZXWpDx8YKs7MLzMH/BCeopv+y9vzrzgkfykCGuWOlSu3mZhj2+FQcrg==",
+      "deprecated": "This functionality has been moved to @npmcli/fs",
+      "optional": true,
+      "dependencies": {
+        "mkdirp": "^1.0.4",
+        "rimraf": "^3.0.2"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
     "node_modules/@pkgr/core": {
       "version": "0.1.1",
       "resolved": "https://registry.npmjs.org/@pkgr/core/-/core-0.1.1.tgz",
@@ -727,6 +791,15 @@
       "integrity": "sha512-RbhOOTCNoCrbfkRyoXODZp75MlpiHMgbE5MEBZAnnnLyQNgrigEj4p0lzsMDyc1zVsJDLrivB58tgg3emX0eEA==",
       "dev": true
     },
+    "node_modules/@tootallnate/once": {
+      "version": "1.1.2",
+      "resolved": "https://registry.npmjs.org/@tootallnate/once/-/once-1.1.2.tgz",
+      "integrity": "sha512-RbzJvlNzmRq5c3O09UipeuXno4tA1FE6ikOjxZK0tuxVv3412l64l5t1W5pj4+rJq9vpkm/kwiR07aZXnsKPxw==",
+      "optional": true,
+      "engines": {
+        "node": ">= 6"
+      }
+    },
     "node_modules/@tsconfig/node10": {
       "version": "1.0.9",
       "resolved": "https://registry.npmjs.org/@tsconfig/node10/-/node10-1.0.9.tgz",
@@ -1722,7 +1795,7 @@
       "version": "6.0.2",
       "resolved": "https://registry.npmjs.org/agent-base/-/agent-base-6.0.2.tgz",
       "integrity": "sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==",
-      "dev": true,
+      "devOptional": true,
       "dependencies": {
         "debug": "4"
       },
@@ -1730,6 +1803,31 @@
         "node": ">= 6.0.0"
       }
     },
+    "node_modules/agentkeepalive": {
+      "version": "4.5.0",
+      "resolved": "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-4.5.0.tgz",
+      "integrity": "sha512-5GG/5IbQQpC9FpkRGsSvZI5QYeSCzlJHdpBQntCsuTOxhKD8lqKhrleg2Yi7yvMIf82Ycmmqln9U8V9qwEiJew==",
+      "optional": true,
+      "dependencies": {
+        "humanize-ms": "^1.2.1"
+      },
+      "engines": {
+        "node": ">= 8.0.0"
+      }
+    },
+    "node_modules/aggregate-error": {
+      "version": "3.1.0",
+      "resolved": "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz",
+      "integrity": "sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==",
+      "optional": true,
+      "dependencies": {
+        "clean-stack": "^2.0.0",
+        "indent-string": "^4.0.0"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
     "node_modules/ajv": {
       "version": "6.12.6",
       "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.12.6.tgz",
@@ -1759,7 +1857,7 @@
       "version": "5.0.1",
       "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
       "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
-      "dev": true,
+      "devOptional": true,
       "engines": {
         "node": ">=8"
       }
@@ -1788,6 +1886,25 @@
         "node": ">= 8"
       }
     },
+    "node_modules/aproba": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/aproba/-/aproba-2.0.0.tgz",
+      "integrity": "sha512-lYe4Gx7QT+MKGbDsA+Z+he/Wtef0BiwDOlK/XkBrdfsh9J/jPPXbX0tE9x9cl27Tmu5gg3QUbUrQYa/y+KOHPQ==",
+      "optional": true
+    },
+    "node_modules/are-we-there-yet": {
+      "version": "3.0.1",
+      "resolved": "https://registry.npmjs.org/are-we-there-yet/-/are-we-there-yet-3.0.1.tgz",
+      "integrity": "sha512-QZW4EDmGwlYur0Yyf/b2uGucHQMa8aFUP7eu9ddR73vvhFyt4V0Vl3QHPcTNJ8l6qYOBdxgXdnBXQrHilfRQBg==",
+      "optional": true,
+      "dependencies": {
+        "delegates": "^1.0.0",
+        "readable-stream": "^3.6.0"
+      },
+      "engines": {
+        "node": "^12.13.0 || ^14.15.0 || >=16.0.0"
+      }
+    },
     "node_modules/arg": {
       "version": "4.1.3",
       "resolved": "https://registry.npmjs.org/arg/-/arg-4.1.3.tgz",
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@@ -7282,11 +7977,30 @@
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       "resolved": "https://registry.npmjs.org/string_decoder/-/string_decoder-1.3.0.tgz",
       "integrity": "sha512-hkRX8U1WjJFd8LsDJ2yQ/wWWxaopEsABU1XfkM8A+j0+85JAGppt16cr1Whg6KIbb4okU6Mql6BOj+uup/wKeA==",
-      "devOptional": true,
       "dependencies": {
         "safe-buffer": "~5.2.0"
       }
     },
+    "node_modules/string-width": {
+      "version": "4.2.3",
+      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
+      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
+      "devOptional": true,
+      "dependencies": {
+        "emoji-regex": "^8.0.0",
+        "is-fullwidth-code-point": "^3.0.0",
+        "strip-ansi": "^6.0.1"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/string-width/node_modules/emoji-regex": {
+      "version": "8.0.0",
+      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
+      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
+      "devOptional": true
+    },
     "node_modules/string.prototype.matchall": {
       "version": "4.0.10",
       "resolved": "https://registry.npmjs.org/string.prototype.matchall/-/string.prototype.matchall-4.0.10.tgz",
@@ -7356,7 +8070,7 @@
       "version": "6.0.1",
       "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
       "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
-      "dev": true,
+      "devOptional": true,
       "dependencies": {
         "ansi-regex": "^5.0.1"
       },
@@ -7445,11 +8159,26 @@
         "node": ">=6"
       }
     },
+    "node_modules/tar": {
+      "version": "6.2.0",
+      "resolved": "https://registry.npmjs.org/tar/-/tar-6.2.0.tgz",
+      "integrity": "sha512-/Wo7DcT0u5HUV486xg675HtjNd3BXZ6xDbzsCUZPt5iw8bTQ63bP0Raut3mvro9u+CUyq7YQd8Cx55fsZXxqLQ==",
+      "dependencies": {
+        "chownr": "^2.0.0",
+        "fs-minipass": "^2.0.0",
+        "minipass": "^5.0.0",
+        "minizlib": "^2.1.1",
+        "mkdirp": "^1.0.3",
+        "yallist": "^4.0.0"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
     "node_modules/tar-fs": {
       "version": "2.1.1",
       "resolved": "https://registry.npmjs.org/tar-fs/-/tar-fs-2.1.1.tgz",
       "integrity": "sha512-V0r2Y9scmbDRLCNex/+hYzvp/zyYjvFbHPNgVTKfQvVrb6guiE/fxP+XblDNR011utopbkex2nM4dHNV6GDsng==",
-      "dev": true,
       "dependencies": {
         "chownr": "^1.1.1",
         "mkdirp-classic": "^0.5.2",
@@ -7461,7 +8190,6 @@
       "version": "2.2.0",
       "resolved": "https://registry.npmjs.org/tar-stream/-/tar-stream-2.2.0.tgz",
       "integrity": "sha512-ujeqbceABgwMZxEJnk2HDY2DlnUZ+9oEcb1KzTVfYHio0UE6dG71n60d8D2I4qNvleWrrXpmjpt7vZeF1LnMZQ==",
-      "dev": true,
       "dependencies": {
         "bl": "^4.0.3",
         "end-of-stream": "^1.4.1",
@@ -7473,6 +8201,27 @@
         "node": ">=6"
       }
     },
+    "node_modules/tar/node_modules/chownr": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/chownr/-/chownr-2.0.0.tgz",
+      "integrity": "sha512-bIomtDF5KGpdogkLd9VspvFzk9KfpyyGlS8YFVZl7TGPBHL5snIOnxeshwVgPteQ9b4Eydl+pVbIyE1DcvCWgQ==",
+      "engines": {
+        "node": ">=10"
+      }
+    },
+    "node_modules/tar/node_modules/minipass": {
+      "version": "5.0.0",
+      "resolved": "https://registry.npmjs.org/minipass/-/minipass-5.0.0.tgz",
+      "integrity": "sha512-3FnjYuehv9k6ovOEbyOswadCDPX1piCfhV8ncmYtHOjuPwylVWsghTLo7rabjC3Rx5xD4HDx8Wm1xnMF7S5qFQ==",
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/tar/node_modules/yallist": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
+      "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
+    },
     "node_modules/terser": {
       "version": "5.28.1",
       "resolved": "https://registry.npmjs.org/terser/-/terser-5.28.1.tgz",
@@ -7800,7 +8549,6 @@
       "version": "0.6.0",
       "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz",
       "integrity": "sha512-McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w==",
-      "dev": true,
       "dependencies": {
         "safe-buffer": "^5.0.1"
       },
@@ -7942,6 +8690,24 @@
       "integrity": "sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA==",
       "dev": true
     },
+    "node_modules/unique-filename": {
+      "version": "1.1.1",
+      "resolved": "https://registry.npmjs.org/unique-filename/-/unique-filename-1.1.1.tgz",
+      "integrity": "sha512-Vmp0jIp2ln35UTXuryvjzkjGdRyf9b2lTXuSYUiPmzRcl3FDtYqAwOnTJkAngD9SWhnoJzDbTKwaOrZ+STtxNQ==",
+      "optional": true,
+      "dependencies": {
+        "unique-slug": "^2.0.0"
+      }
+    },
+    "node_modules/unique-slug": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/unique-slug/-/unique-slug-2.0.2.tgz",
+      "integrity": "sha512-zoWr9ObaxALD3DOPfjPSqxt4fnZiWblxHIgeWqW8x7UqDzEtHEQLzji2cuJYQFCU6KmoJikOYAZlrTHHebjx2w==",
+      "optional": true,
+      "dependencies": {
+        "imurmurhash": "^0.1.4"
+      }
+    },
     "node_modules/universalify": {
       "version": "2.0.1",
       "resolved": "https://registry.npmjs.org/universalify/-/universalify-2.0.1.tgz",
@@ -8015,8 +8781,7 @@
     "node_modules/util-deprecate": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
-      "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==",
-      "devOptional": true
+      "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw=="
     },
     "node_modules/v8-compile-cache-lib": {
       "version": "3.0.1",
@@ -8175,7 +8940,7 @@
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
       "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
-      "dev": true,
+      "devOptional": true,
       "dependencies": {
         "isexe": "^2.0.0"
       },
@@ -8262,6 +9027,15 @@
         "url": "https://github.com/sponsors/ljharb"
       }
     },
+    "node_modules/wide-align": {
+      "version": "1.1.5",
+      "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz",
+      "integrity": "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg==",
+      "optional": true,
+      "dependencies": {
+        "string-width": "^1.0.2 || 2 || 3 || 4"
+      }
+    },
     "node_modules/wildcard": {
       "version": "2.0.1",
       "resolved": "https://registry.npmjs.org/wildcard/-/wildcard-2.0.1.tgz",
@@ -8271,8 +9045,7 @@
     "node_modules/wrappy": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
-      "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==",
-      "dev": true
+      "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ=="
     },
     "node_modules/ws": {
       "version": "8.16.0",
@@ -8419,26 +9192,6 @@
         "node": ">=10"
       }
     },
-    "node_modules/yargs/node_modules/emoji-regex": {
-      "version": "8.0.0",
-      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
-      "dev": true
-    },
-    "node_modules/yargs/node_modules/string-width": {
-      "version": "4.2.3",
-      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
-      "dev": true,
-      "dependencies": {
-        "emoji-regex": "^8.0.0",
-        "is-fullwidth-code-point": "^3.0.0",
-        "strip-ansi": "^6.0.1"
-      },
-      "engines": {
-        "node": ">=8"
-      }
-    },
     "node_modules/yjs": {
       "version": "13.6.12",
       "resolved": "https://registry.npmjs.org/yjs/-/yjs-13.6.12.tgz",
diff --git a/app/yjs-server/package.json b/app/yjs-server/package.json
index 57f7f44..1934f2c 100644
--- a/app/yjs-server/package.json
+++ b/app/yjs-server/package.json
@@ -24,6 +24,7 @@
   "dependencies": {
     "bufferutil": "^4.0.8",
     "nodemon": "^3.1.0",
+    "sqlite3": "^5.1.7",
     "utf-8-validate": "^6.0.3",
     "ws": "^8.16.0",
     "y-websocket": "^1.5.4",
diff --git a/app/yjs-server/src/index.ts b/app/yjs-server/src/index.ts
index fa4a620..6d67b4e 100644
--- a/app/yjs-server/src/index.ts
+++ b/app/yjs-server/src/index.ts
@@ -1,14 +1,19 @@
 import http from "node:http";
-import fs from "node:fs";
-import * as Y from "yjs";
 import { WebSocketServer } from "ws";
 import { setupWSConnection, setPersistence } from "y-websocket/bin/utils";
+import { verbose, Database } from "sqlite3";
+// TODO(xu): introduce workspace to mute relative import warning
+import { writeAnnotationToYjs, readAnnotationFromYjs } from "../../frontend/src/common/yjs/convert";
+import { mustDecodeJsonStr as mustDecodeAnnotationJsonStr } from "../../frontend/src/type/annotation";
 
-const dataDir = process.env.DATA_DIR;
-if (!dataDir) {
-  throw new Error("missing DATA_DIR");
+const databasePath = process.env.DATABASE_PATH;
+if (!databasePath) {
+  throw new Error("missing DATABASE_PATH");
 }
 
+verbose();
+const db = new Database(databasePath);
+
 const server = http.createServer((_, response) => {
   response.writeHead(200, { "Content-Type": "text/plain" });
   response.end("ok");
@@ -39,23 +44,47 @@ server.on("upgrade", (request, socket, head) => {
 // https://github.com/yjs/y-websocket/blob/1638374702d694e5b58ea89d291fdf9d41faa09a/bin/utils.js#L34
 // https://github.com/yjs/y-websocket/issues/76
 setPersistence({
-  bindState: async (docName, doc): Promise<void> => {
-    console.log("bindState", docName);
+  bindState: async (videoId, doc): Promise<void> => {
+    return new Promise<void>((resolve) => {
+      doc.on("update", () => {
+        const anno = readAnnotationFromYjs(doc);
+        db.run("UPDATE videos SET annotation_json = ? WHERE id = ?", [JSON.stringify(anno), videoId], (err) => {
+          if (err) {
+            console.error(`failed to save annotation for video ${videoId}`, err.message);
+            return;
+          }
+          console.log(`persisted annotation for video ${videoId}`);
+        });
+      });
 
-    try {
-      const persisted = fs.readFileSync(`${dataDir}/${docName}.yjs`);
-      Y.applyUpdate(doc, persisted);
-    } catch (e) {
-      console.log(`initializing a new document for ${docName}`);
-    }
+      db.get<{ anno: string | null }>(
+        "SELECT annotation_json AS anno FROM videos WHERE id = ?",
+        [videoId],
+        (err, row) => {
+          if (err) {
+            console.error(`failed to fetch annotation for video ${videoId}`, err.message);
+            resolve();
+            return;
+          }
+          const annoJsonStr = row.anno;
+          if (annoJsonStr === null) {
+            // no annotation
+            console.log(`initializing a new document for ${videoId}`);
+            resolve();
+            return;
+          }
 
-    doc.on("update", () => {
-      // persist
-      fs.writeFileSync(`${dataDir}/${docName}.yjs`, Y.encodeStateAsUpdate(doc));
-    });
+          // convert annotation to yjs doc
+          try {
+            const anno = mustDecodeAnnotationJsonStr(annoJsonStr);
+            writeAnnotationToYjs(anno, doc);
+          } catch (e) {
+            console.log(`failed to decode annotation json for ${videoId}`, e);
+          }
 
-    return new Promise<void>((resolve) => {
-      resolve();
+          resolve();
+        }
+      );
     });
   },
   writeState: async () => {
@@ -67,7 +96,17 @@ setPersistence({
   },
 });
 
+server.on("close", () => {
+  db.close((err) => {
+    if (err) {
+      console.error("failed to close sqlite3", err.message);
+      return;
+    }
+    console.log("Closed the database connection.");
+  });
+});
+
 const port = process.env.PORT || 7777;
 server.listen(port, () => {
-  console.log("running", { port, dataDir });
+  console.log("running", { port, databasePath });
 });
diff --git a/app/yjs-server/tsconfig.json b/app/yjs-server/tsconfig.json
index 2175f21..af3d689 100644
--- a/app/yjs-server/tsconfig.json
+++ b/app/yjs-server/tsconfig.json
@@ -17,10 +17,14 @@
     "preserveWatchOutput": true,
     "skipLibCheck": true,
     "strict": true,
-    "strictNullChecks": true
+    "strictNullChecks": true,
+    "paths": {
+      "@@frontend/*": ["../frontend/src/*"]
+    }
   },
   "exclude": ["node_modules"],
   "ts-node": {
-    "files": true
+    "files": true,
+    "require": ["tsconfig-paths/register"]
   }
 }
diff --git a/app/yjs-server/webpack.config.ts b/app/yjs-server/webpack.config.ts
index 7216dcf..2125f45 100644
--- a/app/yjs-server/webpack.config.ts
+++ b/app/yjs-server/webpack.config.ts
@@ -1,6 +1,5 @@
 import path from "node:path";
 import type { Configuration } from "webpack";
-// import nodeExternals from "webpack-node-externals";
 
 const config: Configuration = {
   target: "node",
@@ -13,6 +12,9 @@ const config: Configuration = {
   },
   resolve: {
     extensions: [".ts", ".js"],
+    alias: {
+      "@@frontend": path.resolve(__dirname, "../frontend/src/"),
+    },
   },
   module: {
     rules: [
@@ -23,7 +25,6 @@ const config: Configuration = {
       },
     ],
   },
-  // externals: [nodeExternals()],
 };
 
 // eslint-disable-next-line import/no-default-export -- fine