Gene ontology enrichment analysis using protein expression.
Gopher uses a Mann-Whitney U Test to look for enriched gene ontology terms that are present when proteins are ranked by a quantitative value, such as the difference between two conditions or the abundance of the protein.
See the documentation at https://TalusBio.github.io/gopher
Gopher can be pip installed using:
pip install gopher-enrichimport gopher # import the package
gopher.test_enrichment(proteins=protein_quant) # run the enrichment